Working with Light, also producing light 2010 Team
Transcription
Working with Light, also producing light 2010 Team
Working with Light, also producing light 2010 Team Brown Light Pattern Control of Cell Circuits E.coli zur Proteinproduktionsmaschine, durch Plasmide auf denen Transkriptionsfaktoren hinter lichtinduzierbaren Promotern codiert waren, umfunktioniert. Team MIT Programmable, Self-Constructing Biomaterials Phagenmatrix wird durch UV-Licht (Säugerzellen) bzw. durch quorum sensing (Bakterienzellen) induziert. Nachweis über fluoreszierende Proteine. ESBS Strasbourg ESBS Strasbourg A light-controllable specific protein degradation system Light-controlled system to degrade any specifically tagged protein Bronze medal ETHZ Basel Maquarie_Australi a SJTU-BioXShanghai Tokyo_Tech, Remotely controlled e. coli cell. Its movement can be directed via red and far-red light impulses, making the cell move into a desired direction User can guide individual cells into a desired direction Best Information Processing Project Maquarie_Australia Engineering a Bacteriophytochrome switch – creating a controllable E. coli chameleon, photoreceptor from Deinococcus radiodurans and Agrobacterium http://2010.igem.org/Team: Macquarie_Australia tumafaciens, this results in E. coli to ‘switch’ from blue to green reversibly Synthetic-biological approaches to Osteoarthritis – with optogenetics, type X collagen gene (Col10a1) http://2010.igem.org/Team:S JTU-BioX-Shanghai Best Information Processing Project The “Wolfman” Coli, cells with different antibiotic resistance, photoregulation system (Cph1-EnvZ) http://2010.igem.org/Team:T okyo_Tech Cambridge Mit Genen von Glühwürmchen und Vibrio fischeri wurden BioBricks entwickelt, die sehr helles Licht verschiedener Wellenlängen erzeugen Erster BioBrick der in normalen e. coli-Stämmen Licht ohne Zugabe eines externen Substrats emittiert Kann als Reporter mit beliebigem Promotor verwendet werden. Best Wiki Finalist iGEMers Prize 2009 MIT Localization and delocalilzation of proteins in the cell triggered by two different wavelengths of light; PCD-production in e coli Harvard Light induced communication between E. coli and S.Cerevisae; E coli senses IPTG and sends light; Yeast then expresses the lacZ gene Wash_U Size of the light harvesting antenna depending on the exposure to light à better use in bio reactors Tokyo Nokogen Construction of E. coli auto protein synthesizer, with light-induced aggregation and self-lysis (coupled to a signal counter) using the holing-/endolysin-system TzuChiU Formosa Construction of a light generating system (GFP) without CO2-emission that switches on in the dark, by use of light-inducible Cph8 and Aequorin-GFP. Sheffield E.Coli reagiert auf verschiedene Wellenlängen und wechselt die Farbe dementsprechend EPFLausanne Ein- und ausschalten von Genen mit Photorezeptoren Gold, Best new biobrick UCL-London Lichtemission mit verschiedenen Farben als Sensor für bakteriellen Stress 2008 Melbourne Temporal Controller Red-light sensor + riboswitch 2006 Chiba University, Japan Bakterien stoppen in ihrer Bewegung bei anschalten von rotem Licht; Ausnutzung der run & tumble Funktion unter Beeinflussung von Licht Tageslicht lässt e.coli anschwellen so dass es mit bloßem Auge sichtbar wird stabiles transientes Signal nach UV Bestrahlung gekoppelt mit bistabilem Netzwerk i.e. lac Regulationssystem, mit Uvsensitivem Promoter (SOS) --> produziert lac… --> UV geschädigte Zelle produziert GFP ETH Zürich XOR & AND gates, je nachdem was aktiviert wird leuchtet nur ein teil oder beide, Aussage ob pattern match oder mismatch Boston University viele Biobricks mit Lux genen, lightproducing network using coliroid photosensor device Calgary Kopplung der coliroid device mit Zelldichtesensor --> GFP wird expremiert sobald genügend Zellen in rotem Licht zusammen sind UT Austin edge detector, an aus schalter lichtabhängig und photofabrication durch lithographie Bakteria delivering and saving Information/ prozessor (clocks, logig) 2010 Team Berkeley: Choachoa's Delivery Service E.coli so modifiziert, dass es von Choanoflagellaten aufgenommen wird, dort dann aus dem Phagosom ausbricht und gezielt Proteine in das Cytosol des Choanoflagellaten schleust. Hong_Kong-CUHK Bio-cryptography: information en/decryption and storage in E. cryptor, designed microorganisms may carry a specific DNA barcode http://2010.igem.org/Team: UT-Tokyo E. coli solves sudoku on the basis of a so called 4C3switch, together with a signal-virus http://2010.igem.org/Team: UT-Tokyo Paris Liliane Bettencourt Paris Liliane Bettencourt two different types of bacterial counters and timers cells can cooperate to act as a timer (based on statistics) mechanical rotary counter implemented within cells Best Foundational Advance logig mRNA Gold Medal TU Munich 2009 Chiba Construction of an E. coli timer, by use of an increasing concentration of signal molecules and induce gene expression of receiver cells. IBB Pune Simulation of the SNOWDRIFT-game by use of exported proteins, like β-galactosidase and construction of a bacterial computer, which acts as a turing machine, by combination of AND gates. Furthermore, new competence genes are introduced into the library. NCTU Formosa Construction of a controllable genetic circuit in E. coli which serves as timer and counter functions, by use of an OR gate and expressing RFP. SJTU Shanghai Construction of an E. coli-based oscillator of prokaryotic bioclock, by use of the toxin/antitoxin-system. The bacteria oscillates between a dormant and active state 2008 University of Washington Gene delivery system, E. Coli = transporter Alberta NINT Logical circuits with anti sense RNA Bologna Bologna bacterial reprogrammable binary memory (EPROM) “flipflop” mechanism using IPTG as reset und UV for on state ESBS Strasbourg Binary counting in yeast (cell cicle), regulatory network over cell generations. HKUSters Random number generator Michigan circadian Clocking analogon to the mammalian Minnesota Comparator/Clock Clock:death after number of divisions Paris Bacterial Clock FIFO oscillation system 2006 oszillierendes e.coli mit Kaisystem, iwie Chimären gemacht Michigan Plasmene: syntethic network design, connection to database.., Recursive landing pads: Method for inserting Genes and DNA on e.coli Chromosome, oscillatory behavior of clocks, manipulation of lac operon kinetic order Enhancement of existing Proteines/Enzymes/Biobricks/Methods & new Kits/ assemblys 2010 Team Baltimore_US DIY-GEM: a path towards low cost high throughput gene synthesis Taq polymerase so modifiziert, dass diese in gängigen Organismen exprimiert und auch ohne aufwendige Aufreinigungsschritte für PCR verwendet werden kann. Edinburgh Entwicklung einer markerlosen Methode zur Einfügung von BioBricks über homologe Rekombination. Entwicklung eines Gerüsts zur Lichtbasierten Heidelberg Slovenia Kommunikation zwischen e. coli Zellen Alternative zu gängigen (markerabhängigen) Methoden Neue Kommunikationsmöglichkeit, einsetzbar in vielen Projekten Best Model toolkit for standardized measurements of interactions between artificial miRNAs and their binding sites Production of tissue specific miRNA gene shuttles (via adeno associated viruses) Application of miRNA (miBricks) in gene therapy. Improvement compared to DNA concerning integration of tissue specificity and fine-tuned target gene expression Gold medal DNA-guided assembly platform 1) Enzymes can be localized directly behind eachother, speeding up their respective biosynthetic reaction 2) Enzymes can be arranged in a different order to perform a different biosynthetic reaction significantly increase the speed , efficiency or direction of a particular biosynthetic reaction Best New Application Area Best New BioBrick Part or Device, Engineered Finalist Grand Prize, Winner of the BioBrick Trophy iGEMers Prize UNIPVPavia Chiba three modular systems were designed to improve production and purification of recombinant proteins by cell cultures - Library of self-inducible promoters - Two standard integrative vectors to insert BioBricks in user-defined positions of E. coli or S. cerevisiae genomes - “in-cell" protein purification methods: PolyHydroxyAlkanoate (PHA) granules and pH-based selfcleaving peptide (Intein) Gold medal Eliminating the False-Input: Genetic Double-Click System (first click has to be memorized temporarily) http://2010.igem.org/Team:C hiba Kyoto The Fantastic Lysisbox - controlling cell death in E. Coli with holin/“anti-holin“ http://2010.igem.org/Team: Kyoto Peking 1st Runner Up, Best Environmental Project, Finalist Heavy Metal Decontamination Kit - transcription factor MerR, a mercury-responsive regulator r and a lead-responsive regulator PbrR in E. coli http://2010.igem.org/Team:P eking An Integrated Platform Based on Bacterial Microcompartment for de novo Proteinaceous Artificial Organelles http://2010.igem.org/Team: USTC USTC Warsaw universal platform for protein delivery to the mammalian cells E. coli strain expressing invasion determinants: invasin from Yersinia pestis and listeriolysin (LLO) from Listeria monocytogenes. Invasin causes uptake of the bacterium into the mammalian cell by induction of endocytosis. Bacterial cells are lysed in the endosome and then LLO is released. LLO is a poreforming toxin which causes endosomal membrane disruption and release of the payload (either protein or DNA) into cytoplasm of the mammalian cell Gold Medal 2009 Virgina_ Common-wealth Evaluation of new and old promotors Berkeley_ Wetlab Evalution of different cell display methods Washington Idealized protein purification system Victoria Australia Construction of a biological lighting system via cell free transcription and translation, which can be powered by waste materials (?). Alberta Construction of a system for building entire, minimal genomes in a fast and modular way. Waterloo Modeling and construction of a platform for chromosome engineering, allowing in vivo assembly of a synthetic chromosome and degradation of the native chromosome in E. coli. Freiburg Bioware Universales Restriktionsenzym Finalist, gold Heidelberg Promotor-design, Mammalian biobricks-library Gold, 2. Platz, Bester PoPS, bester Wiki 2008 UC Berkely Collection of Clonebots who aid synthesizing and analyzing new parts Virginia Contructing a library of transcriptional terminators Warsaw Bacterial device for creating and production of interactors for any given bait protein Waterloo A plasmid-safe, inducible genome-degradation strain for post-kill gene expression Hawai Toolkit for cyanobacteria (switch for downstream gene when nitrate is added, protein export into medium, shuttle vector) IIT Madras Bacterial stresskit via sigma promotors 2006 new strategies and tools for biological circuit design and BioBrick management. Math/Info/ Theorie 2010 Team Davidson-MissouriW: Team VT-ENSIMAG_Biosecurity: Freiburg Software METU Turkey software Foundational Advances in Biology and theKnapsack Problem Das Rucksackproblem: Aus einer Menge von Objekten, die jeweils ein Gewicht und einen Nutzwert haben, soll eine Teilmenge ausgewählt werden, deren Gesamtgewicht eine vorgegebene Gewichtsschranke nicht überschreitet. Unter dieser Bedingung soll der Nutzwert der ausgewählten Objekte maximiert werden. Als Objekte dienen hier TatA-Allele, die Bakterien eine Resistenz gegen Tetracyclin verleihen. Design and development of the GenoTHREAT gene sequence screening software Screening software, die verhindern soll, dass bei kommerzieller Synthese von DNA, Sequenzen synthetisiert werden, die toxisch bzw. gefährlich sind. Software that enables enables research collaboration by real-time sharing of parts, design and documentation Expansion of 2009 project. New functionalities: BLASTsearches, ORF-finding, translation, sequence alignments and restriction site mapping Silver medal Guide for using the BioParts Registry. Specialized software for searching the parts registry to find possible biobricks to include into a different construct Helps tofind input output relations between the parts provide alternative pathways to construct the most reliable and functional Biobrick devices Silver medal USTC_Software ZJU-China WeimarHeidelberg Arts best software iGaME: Synthetic Biology for Gamers - experimental video game which aims at instructing non-biologists to design and improve biological systems http://2010.igem.org/Team: USTC_Software Bach: software as a gene composer http://2010.igem.org/Team:Z JU-China fictional supermarket offering speculative products which are all based on Synthetic Biology improve public awareness about Synthetic Biology and at the same time foster a debate on how we want to see it manifested in our everyday lives 2009 Berkeley_Software Eugene, Spectacles, and Kepler: Managing Synthetic Biology Device Development Illinois-tools Interactive Metabolic Pathways tools; programme to add metabolic pathways to others Washington Software LegoRoboBrick= liquid handling system out of legos Mo_Western_Davidson e.coli and NP-complete problems; SAT problems; logic CBNU Korea Software, which designs a minimal genome consisting of the essential genes of replication. USTC Software Mathematic model and software, which designs perfect plasmids for specific needs, like oscillation behavior Freiburg Software SynBiowave: plattform, die zur Kollaboration und zum Austausch zwischen Wissenschaftlern dient 2008 UC Berkley Tools Clotho – open source BioCAD software which helps managing, Analyzing and deploying new biobricks Calgary ethics Consideration of ethical concerns 2007 Virginia Tech Modellierung der Ausbreitungsdynamik von Epedemien. 2006 Mexico Molekulare Berechnungen/Simulationen von molecular level to n-dimensions and are massively parallel. Also, they are capable of supporting universal computation, self-repair and self-reproduction. Biosensors/ Biomarkers 2010 Team Gaston_Day_School: Construction of a Biological Iron Detector in a Secondary School Environment Eisen-sensitiver Promotor mit fluoreszierendem Protein als Signal. Team IvyTech-South_Bend: To Swim or Not to Swim? Sensor für Enterobakterienkonzentration in Schwimmwasser über quorum sensing und LuxR/pLux system Team UTDallas: Enlisting E. Scherichia Holmes: A modular whole-cell biosensor for the detection of environmental pollutants E.coli so modifiziert, dass es als Sensor für verschmutztes Wasser (Alkane, Aromaten etc) dient. Fluoreszenz als Sensor. Team WITS-South_Africa: Lactoguard: A commensal whole-cell bionsensor for the diagnosis of sexually transmitted infections Lactobacillus so modifiziert, dass chromogener Reporter induziert wird bei viraler Infektion. Siganlverstärkung wurde durch ein positives Feedback System erreicht, dass über quorum sensing auch benachbarte Lactobacilii zum „Leuchten“ veranlasst. DebrecenHungary Imperial College London Eukaryotische Lipid Sensoren: Kit mit einer Auswahl an lipid responsive domains (aus Eukrayonten)zur Konstruktion von Synthetischen Transkriptionsfaktoren. Die Domänen sprechen nur auf vorher festgelegte Lipide an und aktivieren so selektiv eine vorher festgelegte Genexpression. Definierte Genregulation in Eukaryonten. Versch. Anwendungen denkbar (Bsp: ultra sensitive detection of lipid contaminants in the environment). Gold-Medaille Biosenor to detect parasites based on their specific proteases. System to cause a very fast response (color) in case of a positive test result. This allows detection of a range of different parasites Best Human Practices Advance Finalist Best Wiki iGEMers Prize METU Turkey Uppsala Sweden cell sensor which can detect a wide range of CO concentrations in the environment not only detection of carbon monoxide gas but also increased dynamic range of the cell sensor using strong-weak promoter coupling. Gold medal Concentration band detection sensor as a quantitative sensor, which can work in combination with any of these chemical sensors. Application in a bio-clock Bronze medal HKU-HongKong HKU-HongKong The BioSafetyNet, introduction of a suicide mechanism, limited survival in certain conditions (lactose used up → sucicide) http://2010.igem.org/Team: HKU-Hong_Kong Korea_U_Seoul Simultaneous detection of multiple heavy metal ions such as arsenic, zinc and cadmium, reproter: aryl acylamidase, GFP, RFP in E.coli http://2010.igem.org/Team: Korea_U_Seoul Team Virginia_United: Quorum Sensing Amplifiers and a Codesign Approach for Information Processing IIT_Delhi_ 1 Dr.coli - to create a device capable of responding to external stimuli in the form of quantitative protein production http://2010.igem.org/Team:II Tianjin (Lignin degreadation yeast in S. cerevisiae) 2nd experiment: Yeast pharmacist to discover drugs in TCM http://2010.igem.org/Team:T ianjin Sheffield multi-target, water-borne pathogen detection system Bronze medal TU Delft designing a system that can tolerate, sense, dissolve & degrade hydrocarbons (oil) in aqueous environments biological degradation of residual oil in oil sands tailing waters, or treatment of waste water from the oil industry Best Presentation Finalist 2009 Michigan Bacterial sensor for Toluene; degradation of Toluenes; if no toluene apoptose UQ Australia Uptake, reduction and accumulation of mercury in E. coli to remove it from the environment Cornell Cadmium sensor in B.subtilis Gaston_Day_School Sensor for nitrate in water KU Seoul Construction of E. coli which can detect multiple heavy metals in water, coupled to the expression of reporter genes. British Columbia Construction of an E. coli toxin biosensor that changes its color (traffic light scheme) according to the toxin’s concentration. Edinburgh Biosensor für TNT und Nitrate um Landminen zu detektieren Groeningen Schwermetalldetektion mit folgender Gasbildung Gold Finalist UAB-Barcelona E.coli detektiert Trihalomethane und leuchtet mit GFP IPOC1-Columbia Salzkonzentration-detektor für Wasser 2008 Utah State Building a detector for the maximum product yield of polyhydroxybuterate With fluorescent proteins Bejjing Normal BCP (polychlorinated biphenyl, environmental pollutant) detection and degradation Brown Biosensor for water toxins: changes resistance of bacterial dilution (cell lysis) Harvard Microbial fuel cell S. oneidensis produces electrical current after stimulus à biosensor in electrical circuit METU Turkey Metal Cleaning metal binding proteins + bacteriorhodopsi Missouri Miners Ethanol Sensor Prairie View Metal Detection Purdue UV Biosensor 2007 Columbia-Israel Biosensor für Eisen unter UV-Strahlung und Sauerstoff. Glasgow Biosensor für übliche organische Schadstoffe aus Zellen, welche selbst Elektrizität produzieren. MIT Quecksilber Trinkwasserreinigung. Zweizellsystem: 1) Mer-promotor um Quecksilber zu detektieren und dann via GFP-Expression dieses anzuzeigen. 2) Cell-Surface-Display eines Quecksilber-Capturing-Proteins. Beide Zelltypen auf Polymer fixiert. Prairie Biosensor für div. Toxine und organische Inhaltsstoffe Saint-Petersburg Kupferbiosensor für z.B. Wasserproben 2006 Edinburgh erkennt Arsen ab kritischen Konzentrationen (laut WHO) und emittiert ein pHSignal --> nachweisbar mit pH Meter; Kopplung mit LacZgene Valencia Biosensoren in E.coli für Vanillin, pH Änderungen, Applikationen für coliroid photosensor device Prairie View in Micrococcus luteus ein Plasmid geklont, erkennt drei Metalle (Ni, Fe, V) in Kombination (nur in Kombination) MSU Detector für H2 und YFP Expression wenn H2 da Latin America Interaction of UV Photon-Iron Porphyrins Genes: A Microbial Biosensor. Immunology/ Medicine 2010 Team NYU: ImmunoYeast : antibody discovery and production in one simple system Hefe wurde so modifiziert, dass die Zellen fähig zum Screening einer Antikörperbibliothek gegen ein relevantes Antigen waren. Dabei wurden die Antikörper durch Rekombination erstellt und ins Medium sekretiert. Team UCSF: Synthetic Killers - engineering immune cells for cancer therapy Verbesserung von cytotoxischen T-Zellen durch CARs die verstärkt Liganden auf der Oberfläche von Krebszellen erkennen und durch logisches „Gating“, dass die die Schwelle der Singnalintensität für das killen erhöht. BIOTECDresden Modulares System zur Antigenerkennung, Signaverstärkung und -quantifizierung. Anwendung zur Erkennung von Beispielweise Blutkrebs. Durch modularen Aufbau verschiedene Antigene / Antikörper einsetzbar. Gold-Medaille EPF Lausanne Freiburg Bioware St Andrews Asaia (Bakterium, das in der Natur in Anopheles vorkommt) zu einem Chassis zur Bekämpfung von Malaria umbauen. Zielt darauf ab, von kommenden iGEM-Teams weiterentwickelt zu werden. Bereitstellung von Informationen und Bricks, um an Asaia weiterzuarbeiten iGEMers Prize functional, modular Virus Construction Kit for specifically targeting and killing tumor cells Possibility to design your own therapeutic virus Best Health or Medicine Project confer resistance to cholera by taking advantage of quorum-sensing regulated pathogenicity E.Coli will “talk” to the cholerae and trick the cholerae into leaving the intestine before any virulence factors are sufficient to cause illness to the host human Gold Medal KAIST-Korea Tsinghua Stockholm DiscoverY: universal diagnostic yeast, S.Pombe fusion antibody receptors on the surface come in contact with antigens → GFP expression as response to tuberculosis antibodies http://2010.igem.org/Team: KAIST-Korea Novel antigens in E. coli http://2010.igem.org/Team:T singhua Stockholm Fusion of cell-penetrating peptides to proteins that are deficient in skin of vitiligo patients. The cell-penetrating peptides will aid in passing the proteins through the skin and target the pigment cells to reach repigmentation Bronze medal 2009 University of Chicago Degradation of neurotoxines; example of Paraoxon with S.cerevisae Purdue Engineerign microglial cells to sense brain cancer cells and transfer a GFP to the cancer cells therefore labeling them UC_Davis Design of a Bacteria which lives in the stomach of persons and produces an enzyme degrading gliadin; gliadin is responsible for people with celiac disease not being able to eat food with gluten Brown Engineering Staphylococcus epidermis to secrete a histamine-binding protein; histamine is secreted while a allergic reaction to pollen Stanford T-cels , Th17 und tregg cells; E coli senses the population of the cell species and adjusts the in animals with Inflammatory bowl disease NTU Singapore Alternative treatment of Atherosclerosis: Construction of an E. coli system that detects plaque buildup and releases a cholesterol degrading enzyme, a reporter protein and a vasodilator NYMU Taipei Construction of virus catching cells that are not able to support virus replication, have a feedback control and can be removed with the virus. Todai Tokyo Providing projects tackling problems associated with life-style diseases hypercholesterolemia, diabetes, circadian rhythm dysfunction, and bad smoking habits: bioclock E. coli, tobacco sensing E. coli, food with additional nutrition and LDL-receptor expressing yeast for application in the blood stream. Queens Treatment of atherosclerosis by E. coli binding to the site of the plaque, secretion of treating factors and detachment and growth inhibition of the bacteria in the bloodstream. uOttawa Reduction of caloric intake of obese people by transforming part of the food’s glucose into cellulose by use of Lactobacillus. METU Gene Pflaster, das biologisch abbaubar, natürlich, nichtgiftig ist und den Heilprozess der Haut imitiert Sup-biotech paris Double vectorization system für Therapeutica 2008 Bay Area RSI Rebuild coronary tissue with stem cells Caltech multifunctional probiotic bacteria Guelph Beta carotene production in probiotic bacteria Illinois Medical diagnostic 3 ways to detect cholera toxin KULeuven auto drugging disease detection + drugging MIT Teeth-cleaning yhogurt Slovenia Immunobricks immunobricks binding to the innate immune 2007 UC Berkeley Blutersatzmittel von e. coli produziert; Schwerpunkt auf Sauerstofftransport ohne eine Sepsis zu induzieren. Zudem Schutz vor Langzeit einfrieren Ljubljana Viraler Therapieansatz gegen HIV mittels T7-RNA-Polymerase-Bausteinen Harvard Bakterien binden via Oberflächenproteine an spezielle Substrate. Soll für medizinische Anwendungen wie Tumorerkennung sein. Kombination aus Binden mittels Oberflächenproteine und Quorum Sensing mit anschließender Gen-Aktivierung 2006 for targeting and destroying tumour cells using engineered E. coli cells. an information encoding, storage, and retrieval scheme for potential future security and medical diagnostic applications. Plants 2010 Team Penn_State: Team Purdue: Development and Characterization of Hypoxic Stress Response Systems in Mammalian and Plant Models O2 Sensor für Pflanzen (<5% O2, E.coli dann Agrobacterium) und Säugerzellen (<1% O2) Team Harvard: iGarden: an Open Source Toolkit for Plant Engineering Agrobacterium-vermittelte Transformation von Biobricks in Pflanzen (Art Toolkit). Biobricks codierten für: Duft, ausknocken von Planzenallergenen und Blütenfarbe Team Indiana: Plant Time Machines Duft der Pflanzen ändert sich im Tagesrhythmus. Dies wird erreicht durch klonieren spezieller Gene hinter circadian regulierte Promotor. 2009 Indiana Plant transformation vector; cell penetrating peptide which carrys material into cells Engineering (in e.coli for/against other organisms) 2010 Art ScienceBangalore Indirect engineering of C. elegans via biobricks in E. Coli, dsRNA knockdown http://2010.igem.org/Team: CBNU-Korea Design and Construction of Synthetic Minimal Chromosomes of V.cholerae in E. coli http://2010.igem.org/Team:C BNU-Korea HKUST Engineered Lactobacillus against S. aureus infection interspecies quorum quenching system http://2010.igem.org/Team: HKUST Team UC_Davis: Engineering a Spatial Oscillatory Network for Spontaneous Two-Dimensional Pattern Generation in E. Coli The two main components of this system are two quorum sensing constructs that detect the products Lux and Las; the Lux being the signal for a cell to turn off, and the Las being the signal for a cell to turn on. Team Wisconsin-Madison: Universal Platform for Polypeptide Delivery: Intelligent Delivery of Ingestible Enzyme Treatment (iDIET) Lactobacillus so modifiziert, dass es beta-galactosidase nach Lyse freisetzt. Sobald das Bakterium also in den Darm gelangt ist, hilft es beim Abbau von Lactose. Team Yale: Manufacturing electrical circuits using localized microbial metal deposition E.coli so modifiziert, dass es Metall in Lösung reduziert. HokkaidoU_Japan Dr. E. coli: World Smallest Protein Injector with Type lll Secretion Apparatus of pathogenic gram-negative bacterium made available for E. coli. http://2010.igem.org/Team: HokkaidoU_Japan KIT-Kyoto, best poster E.coli Pen": Draw with your own color - ink with genetically modified E.coli by differentially responding to the gradient of hydrogen peroxide treatment http://2010.igem.org/Team: KIT-Kyoto NCTU_Formosa Mosquito Intelligent Terminator, a genetically engineered, temperature controlled E. coli for killing wrigglers http://2010.igem.org/Team: NYMU-Taipei SpeedyBac: detection of quantitative expression, fast report and stop of gene expression, SpeedyReproter: detection of promotor activity via mRNA aptamers and protein reporter, SpeedySwitch: fast translation of preexsisting mRNA, SpeedyDegrader http://2010.igem.org/Team: NYMU-Taipei Continuous Greening Cycle - engineered MOs decompose plant fibers into nutrients through action of cellulolytic enzymes and produce water-absorbant polymers such as poly(gamma-glutamic) acid http://2010.igem.org/Team Osaka RMIT_Australia A Recombinant Peptide Expression System That Exploits Taq Polymerase as a carrier Molecule – via a thermolabile bond allowing the peptide to be cleaved using just temperature http://2010.igem.org/Team:R MIT_Australia Tokyo_Metropolian Life Design: Fine Clothing (Cellulose production), Color Housing (Pattern formation between bacteria) and Delicious Food (Quality judgement of rice) by using E. coli http://2010.igem.org/Team:T okyo_Metropolitan Tokyo-NoKo Gen An EcoTanker for the easy collection and delivery of target compounds in an E. coli microcompartment, phototaxis, quorum sensing http://2010.igem.org/Team:T okyo-NoKoGen 2009 CityColSanFrancisco Bacterial battery; two different species oxidzie/ reduce ferrum: integration of a passive glucose transporter Illinois Decoder; 2 inputs 4 outputs; use sRNA and transcription factors Yeshiva NYC Secretion of proteins into the periplasma: engineer e coli with a weaker cell wallàporeins are secreted in the environment Missouri_Miners Tranfser proteins from Geobacter sulfurreducens to E.coli in order to optimize electron transport to the cell surface thus creating a microbial fuel cell Utah_State Design of a multi-host vector; design of biobrick which enhances the secretion of a certain protein in this case bioplastics HKU-HKBU Construction of a bacterial rotor system, consisting of a motor (biotin-coated), a direction controller (streptavidin-coated) and a speed controller (regulated by aTc). USTC Deriving and construction of an E. coli Automatic Directed Evolution Machine. Aberdeen Bei einem Leck nimmt E.coli das Signal auf, schwimmt an den Ort und synthetisiert 2 Proteine, die zusammen einen biologischen Kleber produzieren, der das Leck repariert (von chem. induziert) Valencia Biomonitor Dritter Platz 2008 UNIPV-Pavia Signal Multiplexer/Demultiplexer Imperial college biofabricator three staged production Kyoto power supply e.coli moves objects Tokyo Tech Bacterial TouchPad 2007 Calgary Biomechanischer Drucker: Zweidimensionales Plotten via Anregen mittels eines roten Lasers. Angeregten Bakterien produzieren Beta Agregase, ein Enzym welches den Agar zersetzt. Tianjin Biologische Imitation einer Diode, gesteuert über das molekulare Signal AHL ( = Funktion der Spannung) Bologna Genetisch codierte Nachahmung eines Schmitt-Triggers, irgendein elektronisches Bauteil 2006 Freiburg DNA faltet sich in zweidimensionales rechteckiges Stück, das rollt sich zusammen, mehrere solche setzen sich zu einem Rohr zusammen --> daraus kann man dann ein Tshirt machen etc. Duke for generating electricity using modified magnetotactic bacteria on a microfabricated device. Pathways , Expressing or Synthesizing sth. (also Biofuels) 2010 LMU Munich (1) creation of an artificial metabolic pathway for the synthesis of azobenzene derivates in E. coli (2) select cells expressing the target gene against cells that do not. Here, TzuChiU_Formosa proapoptotic genes instead of antibiotic resistance are used as a selection marker to induce clean cell-death at different stimuli. (1) Required enzymes are encased in a proteinacious microcompartment (called metabolosome) (2) improve the efficiency and specificity of gene expression in eukaryotic cell-lines Bronze medal Nutrient synthesizer of ß-carotene, in Lactobacillus http://2010.igem.org/Team:T zuChiU_Formosa Team Minnesota: Metabolic Engineering: In vivo Nanobioreactors Kompartimente aus anderen Organismen in E.coli exprimiert und Gene für ein bestimmten Pathway, der normalerweise nur in diesem rekombinanten Kompartiment abläuft, transformiert. Nachweis über Fluoreszenz Team Missouri_Miners: The Electric Microbe: Making A Fuel Cell With E. coli Es wurden 4 Gene zum Transport von Elektronen in Geobacter identifiziert und isoliert. Ziel war es dann, diese Gene auf ein Plasmid zu bringen, in E.coli zu transformieren und somit ein aerobes, mikrobielles Elektronentransportsystem zu etablieren, dass der Benzingewinnung später dienen könnte. IIT_Madras Monash_Australia Pro-biotic Sweetener, under the control of a pseudo AND gate - pro-biotic lactic acid bacteria to produce Monellin, a heat and pH stable sweetening protein in Lactobacillus lactis http://2010.igem.org/Team:II T_Madras Design and construction of a biological ethylene generation device, ethylene from L-methionine by use of the Yang cycle in E. coli http://2010.igem.org/Team: 2009 Nevada Biosynthesis of cinnamaldehyde (toxis for moskitos) in e. coli is normally a plant metabolism; genetically engineering of duckweed (=plant) ArtScienceBangalore Expression of germacradienol/germacrene D synthase in E. coli in order to synthesize geosmin, the odour of moist soil. Wisconsin-Madison Glycine betain production in E.coli à osmotolerance; with the aim of engineering bacteria for using sea water for biosynthetic fuel production Tianjin Construction of a cyanobacteria converter, which enables it to produce ethanol during photosynthesis out of CO2. Second Project: a detector mycrocystins in water, by use of Yeast Gal4 system (yeast two-hybrid). ArtScienceBangalore Geosomin ( Molekül, das nach Erde riecht) in E.coli mithilfe von germacradienol/germacrene D synthase aus Cyanobakterien UNIPV-Pavia Bakterien setzen Lactose in Ethanol um (Milchprodukt-waste wird damit verarbeitet) Gold, best food or energy project Uppsala Produktion von Ethanol und Butanol mit Hilfe von cyanobacteria Synechocystis sp PCC6803 2008 University of Chicago Expression von Muschelproteinen Valencia Regulating temperature via UCP-1 expression Wisconsin Production of biofuel precursors in an effort to find alternative fuel sources 2007 Alberta E. coli soweit zu modifizieren, dass deren Butanoltoleranz erhöht wird und sich diese als Butanolproduzenten eignen. Virginia Butanolproduktion in e.coli 2006 gut riechende e.coli durch Aromatsynthese bei Tag und Carotinproduktion bei Nacht --> Lichtabhängig Türkei /EGE wollten wohl was mit hydrogenproduktion in extremophilen Bakterien optimieren MIT e.coli produziert verschiedene Duftstoffe je nach Wachstumsphase Gene control/activation/suppression/switches…… 2010 Aberdeen Scotland Schalter, der in Hefe auf translationaler Ebene die Gen-Expression kontrolliert. Umschalten zwischen GFP- und CFPExpression je nach Umweltbedingungen. Kontrolle auf translationaler Ebene (nicht transkriptionaler). Verwendung von Hefe (nicht e.coli) SilberMedaille DTUDenmark Genetischer bistabiler Schalter der bei zwei verschiedenen Inputs zwei verschiedene Outputs generiert, die sich gegenseitig ausschließen. Schalter, der den Übergang zwischen zwei stabilen Zuständen ermöglicht, wobei die jeweiligen Zustände nicht andauernd neu induziert werden müssen Gold-Medaille Team Duke: Team Duke: Engineering a Robust Genetic Switch Zelle wurde zu genetischem Transistor gemacht, der unter Verwendung von Leucin-Zippern als Schalter ohne Rauschen arbeiten kann. Team UIUC-Illinois: sRNAs in Artifical Gene Circuits and Bioremediation Applications Endogene and artifizielle sRNA zur Regulation erstellt. Funktion beispielhaft an einem mikrobiellen Metalldetektor dargestellt. UCL London Creation of cells capable of self induction (without addition of reagents) Improvement of production techniques possible. Self induction possible by making cells sensitive to hypoxia via positive feedback loop Gold Medal 2009 IIT Madras Construction of a genetic lock, using several plasmids, which suppress expression of a gene of interest. The lock can be lifted by targeted plasmid loss. Kyoto Construction of a gene switch for expression, which is dependent on the number of cell divisions after the transformation, by use of linear DNA. Second project: construction of an endosymbiotic cell in a cell, like a mitochondria. IIT Bombay India Analysis of change of protein expression due to presence of multiple feedback loops in E. coli by experiments and simulation. Calgary Construction of Vibrio harveyi AI-2 signalling system in E. coli, regulating luciferase expression and biofilm formation, dependent on the cell density (quorum sensing). Mathematic modeling of the behavior of the signaling system. Biotec-Dresden Proteinsynthese wird durch Mikrofluide kontrolliert IPN-UNAM-Mexiko Aktivator/Inhibitor-System zur Analyse von self-emerging patterns 2008 UCSF Silencing blocks of genes during cell development and thus changing Genes of daughter cells BrownTwo Limtation of yeast gene expression Chiba timing of gene expression using quorum sensing 2006 Ljubljana Inhibierung der Signalkaskade des Tolllikerezeptors --> keine Sepsis, künstliche Immunantwort durch feedback loops mit PAMPS Tokio Alliance Regulatorgene auf Plasmiden? Über Logik mit AND und AND AND Gates und keine Ahnung Chemotaxis 2010 UPO Sevilla BielefeldGermany Use chemotaxis for directing a relatively small population of bacteria to interact efficiently with a non-diffusible target exposed on a biotic or abiotic surface. Bronze medal Modulierung eines an der Chemotaxis beteiligten Rezeptors aus Agrobacterium tumefaciens zur Detektion von Capsaicin Schärfestoff in Chili und Pfeffer). Anzeige über Lichtemission. Anzeige der Schärfe von Essen. Theoretisch auch anwendbar für weitere Substanzen ( z. B. Dopamin, Adrenalin oder nahe Derivate) GoldMedaille 2009 UCSF Chemotaxis of cells; change of speed and direction; transport of substances attached to the cell 2008 Heidelberg E. Coli chemotaxis towards biofilms (autoinducer stimulus) and activation of bacteriocidal mechanism. “Killer E. Coli” Tsinghua Chemotaxis system reconstruction 2007 2006 NCBS Bangalore Koordinatenabhängige Migration durch Aspartat und Seringradient (orthogonal zueinander) UCSF Che und Tar Oberflächenproteine als Reaktion auf Aspartat --> Bakterium wird durch Gradienten zb durch Labyrinth gesteuert Rice detection and movement toward s stimulus (zb aus B.Subtilis) leads to expression of protein/killing response etc Other (also quorum Sensing) 2010 Groningen INSA Lyon Newcastle SDU Denmark Development of a self assembling hydrophobic biofilm as coating for surfaces Keep surfaces clean and dry Cheap, non-toxic alternative to commonly used chemical surface coatings Gold medal Control production of PHA granules, which have two main applications: (1) storage system for overproduced lipids with medical applications (2) self-cleaving micro-beads to purify a recombinant protein of interest strong promoter sensitive to the shaking speed and the temperature of the water bath Silver Medal Repair of microcracks in concrete using b. subtilis using and inducing cell motility, filamentous growth and quorum sensing Reparation of damages concrete structures with CaCO3, filamentous cells and Levansucrose Gold medal biological system in E. coli that can induce flow and increase mixing in a fluid a photosensor, that controls the tumbling frequency of E. coli’s; a hyperflagellation part, to increase the number of flagella and the power of the system Safety Commendation ULB Brussels Hydrogen production with e. coli from organic compounds found in wastewater via the mixed acid fermentation pathway Bronze medal Valencia yeast resistant to temperature changes and able to produce a dark pigment. Increase temperature on Mars Switch based on prion proteins Gold Medal BCCS Bristol Nährstoff-Sensor auf Basis von e. coli Expression von RFP bei geringem Nährstoffgehalt im Boden, Expression von GFP bei hohem Nährstoffgehalt im Boden. Einsparung von Düngemitteln in der Landwirtschaft _ Sowohl ökologische als auch ökonomische Vorteile 2nd Runner Up Best Food or Energy Project Finalist 2009 Virginia E.coli takes arsenic and binds it; via Knockout of arsenic ion transporter; spezial proteins which bind arsen Minnesota Work with a well known AND gate aus tet lac and lamda phages promotors; aim: isolation of partsà better understanding Duke Circular Polymerase Extensions cloning; efficient way to produce bioplastics HKUST Construction of a yeast strain that can detect (odor sensing), attract (production of chemical attractant) and eliminate (production of killing toxin) pests. Osaka Creation of a new form of germ paintings (pictures on agar with different colored E. coli) by integrating cell-to-cell communication with motility and color PKU Beijing Construction of a conditioning reflex in E. coli, by use of a bistable switch, which links two environmental signals and leads to expression of a reporter. Tokyo Tech Terraforming of Mars with bacteria, where E. coli is used in four categories: blackened E. coli, Iron-Oxidizing Baceria, Microbial Consortium and Anti-Freezing Protein. Tsinghua Construction of a targeted gene therapy vector, which is cell-specific, has a huge capacity and the potential for mass production Lethbridge Construction of the lumazine compartment in E. coli and localization of fluorescent proteins into it. McGill Mathematical and experimental construction of an oscillating fluorescent E. coli reporter system, which is activated by a substrate, by use of two different strains regulating each other by transcription factors. Toronto MaRS Discovery Construction of micro-compartments in E. coli by use of encapsulin and targeting with eCFP. VictoriaBC Analysis of thermo-sensitive mRNA (ribothermometer), coupled to fluorescent protein expression, and construction of a reporter system for two concurrent signals Cambridge E.Chromi (verschieden Farbproteine werden je nach Konzentration des Inputs produziert) Grand Prize KULeuven E.coli, das Vanillearoma produziert und Konzentration konstant hält TUDelft Konjugation von Plasmiden (Weitergabe einer Gold Eigenschaft) und folgende Selbstzerstörung des Plasmids → die Eigenschaft wird nur in eine Richtung weitergegeben best information process team Mikroorganismus, das Redox-sensitiv ist DTUDenmark Slovenien Nanobricks – dna-origami mit Polipeptiden BCCS-Bristol Transport von Proteinen mit Hilfe von OMV (Outer membrane vesicles) durch Simulation von OMV Kommunikation Newcastle B.subtilis nimmt Cadmium auf und bildet eine Sporeà Aus der Umwelt geschaffen Southampton Schere-Stein-Papier bei Zellen mit Genexpression und Cuorum sensing Paris Interzelluläre Kommunikation auf Vesikeln basierend IOPC2-Columbia Biologisch abbaubare Pesticide. LCG-UNAM-Mexiko Sehr schneller Zelltod wird ausgelöst, wenn Bakterien von Phagen angegriffen werden UNICAMP-Brazil E.coli und Hefe erkennen Verunreinigung und vernichten diese 2008 TU Delft E. Coli sensing temperature with color output University of Alberta detectc and degrades Bisphenol A by an ER alpha/TetR-NOT gate University of Letheridge Seeking and degrading toxic waste if oil refineries. E. Coli finds higher Concentrations by sending out cheZ. University of Sheffield construction of a fusion receptor with a sensing unit of a foreign organism And a transmitting unit of the own organism. USTC Building a self-organising cell-system via quorum-sensing BCCS Bristol move big particlse using “cluster E.Coli” Calgary Wetwar quorum sensing system and bactericin release Cambridge Artificial nervous system with self-organizing electrical patternskünstliche CPU-Nanjing unnatural amino acids Davidson-Missouri Western Hash function in bacterien, XOR Gates Duke production of an eco-friendly bioplastic and degradation of petroleum-based plastics Edinburgh conversion of cellulose into starch and beta-carotene EPF-Lausanne Genetic Network Generating Spatial Patterns through Cell-Cell Communication (2 quorum sensing input signals) and controlled information Processing ETH-Zurich Random cutting/ligating and selection for minimal genome Freiburg Artificial, modular transmembrane receptor system Groningen Conway's Game of Life in Real Life via quorum sensing iHKU self-organized spatial distribution of cells Johns Hopkins Yeast sex detector with flourescence LCG-UNAM-Mexico nickel efflux change conductivity → sing Lethbridge CCS Ligase-Independant Cloning circularize plasmid vectors Mexico UNAM-IPN detect horizontal gene transfer Mississippi State Ligning decomposition Newcastle University simulate artificial nural network evolutionary algorithm → in vivo detection NTU-Singapore inhibition of enterohemmorrhagic EC Peking University Direct evolution of proteins PennState Diaucie Elimination Princeton Neuronal circuits Rice University Resveratrol source Tianjin prisoners dilemma for bacteria + genetiv self-assembly system 2007 Michigan Überwachungssystem von unterschiedlichen Produktkonzentrationen. Anzeige über GFP und RFP, je nach Konzentration Expression je eines der beiden Proteine. PennState Entfernung der Diauxie vor dem Wechsel von Glucose auf Xylose Rice Screenen von Resistenzen via Antibiotika e. coli soll andere Bakterien via Quorumtaxis erkennen können Turkey Konzentrationsabhängige Produktion von Fluoreszierenden Proteinen auf Agarplatten Zwei Zellen werden auf Agarplatten mit "leeren Zellen" gegeben und untersucht, welche der beiden sich durchsetzt. Signalisiert wird die Geschichte via GFP, was normalerweise abgeschaltet ist Oberflächenabhängier Transport von Metall-Ionen mittels Bakterien Bangalore Systembiologische Untersuchungen: Kenntnisse von molekularen Untereinheiten werden auf ein großes Modell übertragen um Aussagen zu einem komplexen Organismus treffen zu können. Experimente mit IPTG-induzierbares lac-System, aTc-induzierbares tetSysten und das lux quorum-sensing System Caltec Erzeugung von spezifischen Viren, welche spezielle RNA oder Proteinexpressions-Muster erkennen können CHSL Konditionierung von Fruchtfliegen, mittels negativer und positiver Umweltstimuli McGill On/Off-System gekoppelt mit Quorum-sensing Naples Synthetisches biologisches Netzwerk welches die Qualität von Olivenöl beurteilen soll Tokyo Bakterien welche Paretos Prinzipien (vgl. Ameisen) gehorchen. Umwandlung von Arbeits und Fortplanzungszellen ineinander von einem undifferenzierten Ausgangszustand aus UCSF Synthetische Proteinscaffolds werden verwendet um den Informationsfluss des Kinasesignalwegs zu kontrollieren Konstruktion eines synthetischen Organells. 2006 synthetic gene network to synchronize cell cycle, Hauptoscilltor ist cell cycle phasen abhängiger promoter- Pcya, Über quorum sensing Imperial College, London mimic lotka volterra predator prey interactions in molecular system, Kopplung an Lux System Cambridge Bakterienpopulationen mit zwei verschiedenen Quorumsensingsystemen, biswitched, Bakterien treffen sich und kämpfen, Verlierer ändert Farbe und wechselt sozusagen zum Gegner Harvard ebenfalls Kai oscilationssystem aus Cyanobakterien in e.coli Zelle und Substrat sollen sich leichter finden, zb Streptavidin an Zelloberfläche expremieren --> biotinylierte Moleküle können hin Molekulare Container, die öffnen und schließen durch Stimuli zb für Drug delivery etc mcGill split YFP,Luciferase GFP, Elowitz Repressilator mit quorum sensing gekoppelt Toronto rotes oder grünes protein je nach Temperatur, T-sensitives LacI Protein, Dimerisierung/Tetramerisierung je nach Temperatur Purdue Fluoreszierendes Fotopapier, Promoter draufdrucken, e.coli expremieren GFP/RFP Missouri Hin/Hix invertase system in E.coli --> Flipping DNA (Pancake problem lösen) Oklahoma Jede Zelle repräsentiert einen Knotenpunkt, eine Zelle wird angeregt, sendet Signal weiter--> Signal breitet sich aus, Sichtbarmachung durch versch. Farben Berkeley Bakterien senden Nachricht über Plasmit Konjugation, nur Bakterien die die richtigen RNA Übersetzungsschlüssel haben können Nachricht lesen Arizona System expremiert drei versch. Farben - induktionsabhängig, an und abschaltbare Farben --> Bild Penn State relay race Davidson Solving the Burnt-Pancake Problem with an E. coli Computer Princeton PROGRAMMED DIFFERENTIATION OF MOUSE EMBRYONIC STEM CELLS USING ARTIFICIAL SIGNALING PATHWAYS Brown bacteria move in fluid, stop moving and change color when near the "IT"cell, other bacteria swimming near the frozen ones reconstitute their motility