Pathobiome: Pathogens in microbiotas in hosts

First International congress on
Pathobiome:
Pathogens in microbiotas in hosts
June 24-26, 2015 – National Veterinary School of Alfort, Paris, France
Preliminary Agenda
Day 1- June 24, 2015
8h30: Registration of Attendees
9h15: Welcoming and introduction Remarks by the Pathobiome 2015 chairmen
9h30-10h30: Opening lecture:
Tracing arms races in the microbiome - Alice McHardy (Helmholtz Centre for
Infection Research, Düsseldorf, Germany)
10h30-11h: Keynote lecture
The phyllosphere community of Arabidopsis thaliana: Microbiota composition and
individual fitness strategies – Daniel Müller (Swiss Federal Institute of Technology
of Zurich, Switzerland)
11h-11h:30 Coffee Break & Posters
Host-Environment-Pathobiome crosstalk
11h30-12h30: Keynote lecture:
Evolutionary dynamics of bacterial host-switching and the molecular basis for
Staphylococcus aureus host-adaptation. J.R. Fitzgerald (University of Edinburg,
UK)
12h30-13h: Oral presentations
Is Straphylococcus aureus CC398 increasingly causing invasive infections in humans
and animals result from the acquisition of phages? Nathalie Van der MeeMarquet (University of Geneva Hospitals, Switzerland).
13h-14h: Lunch break
14h-15h: Keynote lecture:
Toward an understanding of the plant-microbiome-pathogen triangle. Sheng Yang
He (Michigan State University, USA).
15h-17h : Oral presentations
In vivo experimental evolution system of a Bacillus cereus sensu lato strain in the gut
of the lepidopteran Galleria mellonella. Rafael Patino-Navarette (INRA, Jouy-enJosas, France).
Influence of the gut bacterial microbiota on Leishmania mexicana transmission by
sand fly bite. Emilie Giraud (London School of Hygiene and Tropical Medicine,
London, UK).
Metagenomic and functional study of the interaction between the rhizospheric
microbiota of Solanum lycopersicum and the pathogen Phytophthora parasitica.
Marie Larousse (INRA, Sophia Antipolis, France).
Potential impact of co-infection on pathogen evolutionary trajectories. Charlotte
Tollenaere (IRD, Montpellier, France).
17h-17h30: Coffee Break & Posters
17h30-19h: Oral presentations
Pathobiome diversity and co-infection patterns in a community of rodents Jessica
Abbate (INRA, Montpellier, France).
Complex interactions between pathogens, microbial communities and animal hosts
population. Mickael Kosoy (CDC, Colorado, USA).
Statistical modelling of associations and interactions between vector borne parasites,
using data from cross-sectional studies. Gwénaël Vourc’h (INRA, ClermontFerrand, France)
19h: Ice breaking party (provided by ANSES) in the Pavillon de la direction,
Ecole vétérinaire.
Day 2- June 25, 2015
9h-10h: Opening lecture
Man-microbiome symbiosis in health and disease. Joël Doré (INRA, Jouy en Josas,
France)
10h-10h30 : Coffee Break & Posters
Analysis of Pathobiome, pathogen discovery and innovative methods
10h30-11h30: Keynote lecture
Microbial surveillance and discovery in health and disease. W. Ian Lipkin (Columbia
University, USA).
11h30-13h: Oral presentations
FROGS: Find rapidly OUT with Galaxy solution. Lucas Auer (INRA, CastanetTolosan, France)
MetLab: An in silico experimental design, simulation and validation tool for viral
metagenomics studies. Juliette Hayer (University of Agricultural Sciences,
Uppsala, Sweden).
Comparison of next-generation sequencing approaches surveying bacterial
pathogens in wildlife. Maria Razzauti (INRA, Montpellier, France).
13h-14h: Lunch break
14h-16h: Oral presentations
Characterization and Co-infection Studies with an Insect-Specific Flavivirus found in
Portugal and Greece Matthias Niedrig (Robert Koch Institute, Berlin, Germany).
Kobuvirus in brains of piglets diagnosed with congenital tremor type A-II. Maja
Malmberg (University of Agricultural Sciences, Uppsala, Sweden).
The pathobiote of the Steinernema entomopathogenic nematodes: the Xenorhabdus
bacterial symbionts and the others? Sophie Gaudriault (INRA, Montpellier,
France).
15h30-16h : Coffee Break & Posters
Microbial ecology and pathobiome
16h-17h30: Oral presentations
Geo-metagenomics: deciphering the spatial biodiversity of plant viruses associated
with Western Cape and Camargue agroecosystem Philippe Roumagnac (CIRAD,
Montpellier, France).
The Asian tiger mosquito bacterila microbiota: a new way for understanding the
vectorial pathosystem. Guillaume Minard (CNRS, Université, Lyon).
Emerging horizons to understand tick-borne diseases : shifting from the one
pathogen-one disease vision to the pathobiome paradigm. Muriel VayssierTaussat (INRA, UMR BIPAR, Maisons-Alfort, France)
17h45: Departure for ORSAY Museum, visit and gala dinner.*If you are interested
to take part to the visit and dinner, please register on line or contact the organizers.
Day 3- June 26, 2015
Microbial ecology and pathobiome
9h-10h Keynote lecture:
Microbes, parasites and immune diseases Gabriele Sorci (Université de Bourgogne,
France).
10h-11h00 : Oral presentations
Can pathogenic bacteria play a major role in the functioning of disturbed natural
ecosystems? Jean-François Humbert (INRA, Paris).
Bacterial communities associated with natural populations of Arabidopsis thaliana:
from a genetic towards an ecological perspective. Claudia Bartoli (INRA,
Castanet-Tolosan, France).
11h00-11h30: Coffee Break & Posters
11h30-12h30 Oral presentations
Games of Thrones in microbiota: Rickettsiella and Wolbachia symbionts in isopods.
Didier Bouchon (Université de Poitiers, France).
Hospital water systems and healthcare associated infections: does the patient-sink
niche constitute a pathobiome? Guilhem Royer (UMR5569 HSM, Montpellier,
France).
12h30: Young scientific awards for oral and Poster presentation (awards
offered by the Societé Française de Microbiologie, and the Société Française
de Phytopathologie).
Posters
1-Role of oxylipins produced during the interaction between the endophytic fungus Paraconiothyrium
variabile and the phytopathogen Fusarium oxysporum Caroline Kunz (MNHN, Paris, France).
2-A murine Model of Plasmodium and filariasis co-infection: parasitology and immune response
Gregory Karadjian (Anses, Maisons-Alfort, France).
3-Detection of pathogens from mass-reared insects: new challenges for a new industry Thomas
Lefebvre (Ynsect, Evry, France)
4-Study of the microbiome from the Lyme disease principal reservoir in southern Quebec
(Peromyscus leucopus) Adrien André (Université de Liège, Belgium)
5-Virome characterization of Aedes vexans and Culec poicilipes; two mosquitoes, vectors of the Rift
Valley Fever Patricia Gil (CIRAD, Montpellier, France)
6-Culture isolation and phenotypic characterization of the microbiota of the entomophagic nematodes
Steinernema Sylvie Pagès (Université Montpellier 2, France)
7-Deciphering the tick pathobiome Sara Moutailler (Anses, Maisons-Alfort, France)
Microbiota of bovine udder and susceptibility to mastitis in dairy cows Yves Le Loir (INRA, Rennes,
France)
8-How the rizosphere pathogen Raltsonia solanaceaum invades plant roots Keke Wang (INRA,
Castenet-Tolosan, France)
9-Emerging pathogens in vertebrates: bacteria of the Midichloriaceae family (order Rickettsiales)
Alessandra Cafiso (Università degli Studi di Milano, Italy)
10-Molecular and serological evidences of circulating Midichloria mitochondrii, a symbiont of the tick
Ixodes ricinus in roe deer (Capreolus capreolus) Valentina Serra (Università degli Studi di Milano,
Italy)
11-Giardia intestinalis impact on reindeer calves systemic innate immune response Tarmo Niine
(Estonian University of Life Sciences, Tartu, Estonia)
12-Metagenomics reveals shared bacterial communities in ticks and rodents with potential interest for
new epidemiological cycles affecting animals and/or humans. Jean-François Cosson (INRA,
Maisons-Alfort, France)
13-Insect/pathogen synergism for the biocontrol of Lepidium draba, an invasive weed in the US
Melanie Tannieres (European Biological Control Laboratory, Montferrier-sur-Lez, France)
14-Healthcare associated pathobiomes: the example of the cardiac surgery Sara Romano-Bertrand
(CHRU Montpellier, France)
15-From water resistome to human pathobiome Patricia Licznar-Fajardo (CHRU Montpellier,
France)
16-Diversified bacterial populations act as emerging and pathogenic entities in waterborne human
infections Emile Talagrand-Reboul (Université de Montpeliier, France)
17-Pathobiome: a valuable concept in Cystic fibrosis Sara Romano-Bertrand (CHRU Montpellier,
France)
The congress is funded by INRA (SPE department, MEM Metaprogramme), National
Veterinary School of Alfort, Anses, the French society of Microbiology and the French
Society of Phytopathology.