Program bioinformatics 2015 - the Summer Schools of Angers

Bioinformatics Summer School 2015
Program
Monday 29 th June
09:30-10:00am: Participant Arrival & Coffee Break
E0.02 room
10:00-12:00pm: Presentation of the participants and their research
interests/experiences
Frédéric Lardeux, Angers University (FR)
Jérémie Bourdon, Nantes University (FR)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
5:00-6:00pm:
Plenary Conference: 'Polio: nearly extinct but not to be ignored'
Gareth Williams, Bristol University, (UK)
Faculty of Arts - Amphi E (Campus Belle-Beille)
6:00-6:45pm:
Opening of the Summer Schools
Isabelle Richard, Dean of the Faculty of Medicine, Angers University (FR)
John Webb, Vice-president for International Relations, Angers University
(FR)
Faculty of Arts - Amphi E (Campus Belle-Beille)
From 6:45pm:
Welcome Barbecue
Cafeteria l’Escale (Campus Belle-Beille)
Tuesday 30 th June
9:00-12:30pm:
Warm up Session
Jérémie Bourdon, Nantes University (FR)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:15-5:30pm:
Warm up Session
Jérémie Bourdon, Nantes University (FR)
E0.02 room
Wednesday 1st July
9:00-12:30pm:
Session 1: Statistics and classification for genomic studies
Stéphane Robin, INRA, Paris (FR)
Sébastien Loustau et Frédéric Proia, Angers University (FR)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:15-5:30pm:
Session 1: Statistics and classification for genomic studies
Stéphane Robin, INRA, Paris (FR)
Sébastien Loustau, Frédéric Proia, Angers University (FR)
E0.02 room
6:30pm:
Visit of Angers by train
Car park of the castle
Thursday 2 nd July
Session 2: Clinicobiological Databases
9:00-10:00am:
Introductory course
Context of clinicobiological data in human genetics; the Human Variome
Project; Introduction to Locus-specific Databases; nomenclature for the
description of sequence variants
10:00-10:30am: Example of a locus-specific database #1
A locus-specific database for mutations in GDAP1 allows analysis of
genotype-phenotype correlations in Charcot-Marie-Tooth
Marc Ferré, Angers University (FR)
E0.02 room
10:30-11:00am: Example of o locus-specific database #2
A locus-specific database for mutations in OPA1 with advanced patient’s
ophthalmological data
Dan Milea, Singapore Eye Research Institute (SG)/University Hospital of
Angers (FR)
Salim Khiati, Angers University (FR)
Marc Ferré, Angers University (FR)
11:00-12:00pm: Roundtable
Dan Milea, Singapore Eye Research Institute (SG)/University Hospital of
Angers (FR)
Salim Khiati, Angers University (FR)
Marc Ferré, Angers University (FR)
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:00-5:00pm:
Session 2 Workshop: Creating a locus specific database
Marc Ferré, Angers University (FR)
Salim Khiati, Angers University (FR)
E0.02 room
Friday 3rd July
8:45am:
The bus will pick you up at 8:45pm at Couffon Pavot Residence to drive you
to Nantes
Session 3 and 4: Next generation sequencing (NGS) in genetics and
genomics
10:00-11:00am:
Introduction to “Next generation sequencing (NGS)”
Solena Le Scouarnec, Nantes University (FR)
11:00-12:00pm:
Session 3: Visit of the Genomic and Bioinformatics core-facility
Richard Redon, Nantes University (FR)
Audrey Bihouée, Nantes University (FR)
12:30pm:
Lunch (picnic)
2:00-5:00pm:
Interactive session (4): From the raw sequences to the nonsynonymous variants : A short exome analysis
Pierre Lindenbaum, Nantes University (FR)
6:00-8:00pm:
City tour of Nantes
8:00-11:30pm:
Free time in Nantes
(The bus will pick you up at 11:30pm at Baco-Lu parking to drive you back to the student
residence)
Saturday 4th July or Sunday 5 th July
Atlantic Coast day(s)
You will get a two-day ticket, meaning you can hop on any regional trains (TER) at given time
during the week-end.
You can spend the night there (organized on your own) or travel back and forth on the same
day.
Make sure to bring your swimsuit along!
Monday 6 th July
9:00-12:30pm:
Session 5: Bioinformatics and Business companies
Hubert Beaumont, Median Technologies, Valbonne (FR)
Mohammed Bennanni, President Qualees, Paris (FR)
Vincent Procaccio, Angers University (FR)
Sébastien Loustau, Angers University (FR)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:15-5:30pm:
Session 5: Bioinformatics and Business companies
Hubert Beaumont, Median Technologies, Valbonne (FR)
Vincent Procaccio, Angers University (FR)
Sébastien Loustau, Angers University (FR)
E0.02 room
6:30-8:30pm:
Kayak session
Lac de Maine
Tuesday 7 th July
9:00-12:30pm:
Session 6: Microbial metagenomics
Damien Eveillard, Nantes University (FR)
Lois Maignien, University of Western Brittany (FR)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:15-5:30pm:
Session 9: Introduction to Metabolic Network analysis
Jérémie Bourdon, Nantes University (FR)
Workshop session #1: basics skills on Metabolic Network analysis
Workshop session #2: basics skills on Metabolic Network analysis
E0.02 room
Wednesday 8 th July
9:00-12:00pm:
Session 7: Association mapping and system genetics - from GWAs to
function
Common Variants: the GWAs
Rare variants: pooled tests
Christian Dina, Nantes University (FR)
Juliana Ionita Laza, Columbia University (USA)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:15-5:30pm:
Session 7: Association mapping and system genetics - from GWAs to
function
Hands on GWAs
Hands on rares variants
Christian Dina, Nantes University (FR)
Juliana Ionita Laza, Columbia University (USA)
E0.02 room
6:30-8:00pm:
Meeting industrial firms (optional)
Amphi 200 – Faculty of Medicine
Thursday 9 th July
Session 8: Optimization methods for bioinformatics
9:00-10:30am:
Introduction
Laëtitia Jourdan, INRIA Lille (FR)
(FR)
Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University
E0.02 room
11:00-12:30pm: Presentation
(FR)
Laëtitia Jourdan, INRIA Lille (FR)
Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University
E0.02 room
12:30pm:
Lunch at l’Escale – Belle Beille
2:15-4:00pm:
Article analysis
Laëtitia Jourdan, INRIA Lille (FR)
Béatrice Duval, Frédéric Lardeux, Frédéric Saubion, Angers University
(FR)
E0.02 room
6:00 – 8:30pm:
Olympiad
SUAPS, Campus Belle Beille
Friday 10 th July
9:00-12:30pm:
Session 9: Case study and guided exercices on « Computer modeling
of living systems »
Constraint-based of metabolic networks
Alexander Bockmayr, Berlin University (DE)
Jérémie Bourdon, Nantes University (FR)
E0.02 room
12:30pm:
Lunch at cafeteria l’Escale – Belle Beille
2:00-3:00pm:
Session 9: Case study and guided exercices on « Computer modeling
of living systems »
Workshop session #3 Metabolic Networks on communities
Alexander Bockmayr, Berlin University (DE)
Jérémie Bourdon, Nantes University (FR)
E0.02 room
3:30-5:30pm:
Closing of the Summer Schools 2015
Amphi 200, Faculty of Medicine
From 6:00pm:
Visit of Jean Lurçat tapestries and farewell drinks
Museum Jean Lurçat