Curriculum Vitae - Université Paris-Sud

Curriculum Vitae
Fabien Cailliez
26 rue Didot
75014 Paris
Home: (+33) 6 73 61 33 88
Oce: (+33) 1 69 15 42 06
E-mail: [email protected]
Nationality: French
Age: 27
Current position : Post-doc fellow at the École Nationale Supérieure de Chimie de Paris
Education
29 Sept. 2006 : PhD thesis defense.
English title: "Study of the mechanical properties of proteins using molecular modeling".
Supervisor: Dr. Richard Lavery (CNRS, France).
Examiners:
- Prof. Catherine Etchebest (Université Paris VII - France)
- Prof. Martine Prévost (Université Libre de Bruxelles - Belgium)
- Prof. Georges Wip (Université Louis Pasteur, Strasbourg - France)
- Dr. Yves-Henri Sanejouand (CNRS - France)
- Dr. Patrick Fuchs (Université Paris VII - France)
20032006
: PhD student at the University of Paris VII.
Research work in the "Laboratoire de Biochimie Théorique" (IBPC), CNRS UPR9080.
20022003
: Master of Science in molecular modeling and bioinformatics at the University of Paris
VII, with Honors.
20012002
: Agrégation de Chimie et Physique (national teaching qualication).
Rank: rst.
20002001
: Master of Science in Physical Chemistry, University of Orsay, with Honors.
19992000
: B.S. in Physical Chemistry, University of Orsay, with Honors.
19992003
: Student of the ENS Cachan (french institute of higher education where students
are trained over four years to become teachers and researchers) in the Department of
Chemistry.
Research activities
Since 2007 : Post-doc fellow at the ENSCP (Paris):
• "Study of water conned in hydrophobic cavities".
• Contact : Prof. Alain Fuchs, ENSCP.
[email protected]
20062007
: Research Assistant in the Laboratoire de Chimie Physique in Orsay:
• "Study of the adsorption of water molecules in zeolites using Monte Carlo
simulations".
• Contact : Dr. Anne Boutin, Laboratoire de Chimie Physique.
[email protected]
20032006
: PhD in the Laboratoire de Biochimie Théorique, Paris:
• "Use and development of molecular modeling methods to study mechan-
ical properties of proteins".
• Contact : Dr. Richard Lavery, IBCP.
[email protected]
Summer 2005 : Two-months stay (June and July) at the Georgia Institute of Technology (USA)
• "Development of a multi-scale representation of proteins for molecular
modeling".
• Contact : Prof. Steve Harvey, Georgia Institute of Technology.
[email protected]
Summer 2001 : Three-months training period (June to August) in the Crystallography and Bioinformatics Laboratory of Cambridge (UK):
• "Development of SEGNO, a program that assigns secondary structures
in proteins from structural data".
• Contact : Dr. Simon Lovell, University of Manchester.
[email protected]
Teaching activities
Since 2006 : Teaching Assistant at the University of Orsay in the Department of Chemistry.
190 hours of practical and theoretical teaching in general and Physical Chemistry.
• B.S. in Chemistry:
Practicals: "Wine Chemistry" (25 hours); "Fireworks Chemistry" (50 hours).
Lectures and Tutorials: "Chemical Thermodynamics and Cinetic" (75 hours).
• Master's Degree in Chemistry:
Practicals: "Initiation to molecular modeling" (25 hours).
Lectures: "Electrochemistry" (15 hours).
20032006 : Teaching Assistant at the University of Paris VII in the Department of Biochemistry.
64 hours of Practicals per year (Enzymology and Bioinformatics) for B.S. students.
Publications and communications
Articles:
• Navizet I, Cailliez F and Lavery R (2004). Probing protein mechanics: residue-level properties and their
use in dening domains.
Biophys J
87(3):1426-35.
• Cubellis MV, Caillez F, Blundell TL and Lovell SC (2005). Properties of polyproline II, a secondary
structure element implicated in protein-protein interactions.
Proteins
58(4):880-92.
• Cailliez F and Lavery R (2005). Cadherin mechanics and complexation: the importance of calcium
binding.
Biophys J
89(6):3895-903.
• Cubellis MV, Cailliez F, Lovell SC (2005). Secondary structure assignment that accurately reects
physical and evolutionary characteristics.
BMC Bioinformatics
6 Suppl 4:S8.
• Cailliez F and Lavery R (2006). Dynamics and stability of E-cadherin dimers.
3971.
Biophys J
91(11):3964-
• Trzpit M, Soulard M, Patarin J, Desbiens N, Cailliez F, Boutin A, Demachy I and Fuchs AH (2007).
The eect of Local Silanol Defects on Water Adsorption in Silicalite-1 Zeolite. Ajoint Experimental and
Molecular Simulation Study. Accepted in Langmuir.
Oral Communications in conferences:
• May 2005: XIVe colloque du GGMM, ile des Embiez (France).
Cellular Adhesion: Study of the impact of
and R. Lavery.
Ca2+
ions on the dynamical properties of Cadherins
, F. Cailliez
• September 2005: 8e Journées Francophones des Jeunes Physico-Chimistes, Marly le Roi (France).
Cellular Adhesion: Molecular Dynamics study of the dynamical properties of Cadherins
R. Lavery.
, F. Cailliez and
• January 2006: 13e rencontres doctorales de l'école doctorale de Biochimie et Biologie Moléculaire, Paris
(France).
Molecular Dynamics study of the dynamical properties of Cadherins
, F. Cailliez and R. Lavery.
• May 2007: Fundamentals of Adsorption 9, Giardini Naxos (Italy).
Water condensation in hydrophobic zeolites, F. Cailliez, N. Desbiens, I. Demachy-Vacus, A. Boutin,
A. fuchs, M. Trzpit, M. Soulard, and J. Patarin.
Seminars:
• July 2005: Seminar in Prof. Steve Harvey's Laboratory, Atlanta, GA (USA).
Hybrid All-atom/Coarse-grained representation for proteins
, F. Cailliez.
• February 2006: Laboratoire de Biochimie Théorique - IBPC, Paris (France).
, F. Cailliez.
Hybrid representation model for proteins
• June 2006: Neuvièmes entretiens de l'IBPC, Paris (France).
Study of dynamical properties of cadherins
, F. Cailliez and R. Lavery.
• June 2007: Journées Modélisation de l'ENS-ENSCP 2007, Paris (France).
Molecular simulation study of water intrusion into hydrophobic zeolites
Bacus, and A. Fuchs.
, F. Cailliez, A. Boutin, I. Demachy-
• August 2007: Seminar in Prof. Michael Levitt's Laboratory, Stanford, CA (USA).
Water intrusion in hydrophobic zeolites using Monte Carlo simulations
Bacus, and A. Fuchs.
, F. Cailliez, A. Boutin, I. Demachy-
Posters:
• October 2004: 12e rencontres doctorales de l'école doctorale de Biochimie et Biologie Moléculaire, Paris
(France).
Probing Protein Mechanics
, F. Cailliez, I. Navizet and R. Lavery.
• May 2007: Fundamentals of Adsorption 9, Giardini Naxos (Italy) and 3e réunion Groupe Français des
Zéolithes-Groupe d'Étude en Catalyse-Division Catalyse de la Société Française de Chimie, La Grande
Motte (France).
Molecular simulation study of water intrusion in hydrophobic zeolites, F. Cailliez, N. Desbiens, A. Boutin,
I. Demachy and A.H. Fuchs.
Skills
• Languages: French (native), English (good), German (basic), Russian (basic).
• Computing:
- Operative systems: Windows and Linux.
- Programming languages: Fortran77, Fortran90, C, BASH, Python (basic).
- Molecular modeling softwares: AMBER, VMD.