In vitro culturing and assessment of somaclonal variation of
Transcription
In vitro culturing and assessment of somaclonal variation of
Türk Biyokimya Dergisi [Turkish Journal of Biochemistry–Turk J Biochem] 2011; 36 (4) ; 296–302. Research Article [Araştırma Makalesi] Yayın tarihi 30 Aralık, 2011 © TurkJBiochem.com [Published online 30 December, 2011] In vitro culturing and assessment of somaclonal variation of Solanum tuberosum var. desiree [In vitro kültürde büyütülen Solanum tuberosum var. desiree’deki somaklonal varyasyonun değerlendirilmesi*] Faiza Munir1, Syed Muhammad Saqlan Naqvi2, Tariq Mahmood3 Departments of 1Biotechnology and 3Plant Sciences, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad-46320, 2Department of Biochemistry, University of Arid Agriculture Rawalpindi, Pakistan Yazışma Adresi [Correspondence Address] Dr. Tariq Mahmood Department of Plant Sciences, Quaid-i-Azam University, Islamabad-46320, Pakistan. Tel: +92-51-90643144 Fax: +92-51-2601059 E-mail: [email protected] * Translated by [Çeviri] Ebru Karabal. Registered: 11 May 2011; Accepted: 19 September 2011 [Kayıt Tarihi : 11 Mayıs 2011; Kabul Tarihi : 19 Eylül 2011 http://www.TurkJBiochem.com ABSTRACT Aim: Genetic variability frequently occurs in micropropagated plants. In the present study, random amplification of polymorphic DNA technique is used to assess somaclonal variation in Solanum tuberosum var. desiree. Detection of somaclonal variants at an initial phase of growth can be valuable in establishing better tissue culture and transformation system in potato by quality control. Materials and Methods: Callus culturing conditions optimized at different hormonal concentrations. Three growth regulators 2,4-dichlorophenoxyacetic acid (2,4-D), 6-benzylaminopurine (BAP) and zeatin were used in different concentrations and combinations. Maximum callus regeneration (90%) was observed at 2.5 mg/L 2,4-D while minimum growth was monitored at 1.5 mg/L Zeatin and 1.0 mg/L BAP combination. Potato plant was also regenerated from callus cells with best results on Murashige and Skoog basal media supplemented with both 1.0 mg/L BAP and 1.5 mg/L Indole acetic acid. Genetic variability in in vitro cultured callus at different hormonal concentrations was assessed by using random amplification of polymorphic DNA technique. Results: Ten different decamer oligonucleotide primers generated 111 reproducible amplified products. The similarity coefficient values calculated through Simqual subprogram of numerical taxonomy system of multivariate software ranged from 0.419-0.838. Cluster analysis divided five samples into two groups, an in group and an out group. Maximum polymorphic bands were revealed by using hormonal combination Zeatin 1.5 mg/L and BAP 1.0 mg/L in calli cultures. Conclusion: Results indicate that random amplification of polymorphic DNA is an effective technique for the assessment of genetic variability in in vitro cultured calli. Conflict of Interest: The authors have no conflict of interest. Key Words: Solanum tuberosum, somaclonal variation, in vitro culturing, RAPD. ÖZET Amaç: Mikropropagasyon uygulanan bitkilerde çoğunlukla genetik varyasyon oluşur. Çalışmamızda, Solanum tuberosum var. desiree’de rastgele çoğaltılmış polimorfik DNA (random amplification of polymorphic DNA – RAPD) yöntemi ile somaklonal varyasyon değerlendirilmiştir. Somaklonal varyantların büyüme başlangıcında belirlenmesi, kalite kontrolü sayesinde patateste daha iyi doku kültürü ve transformasyon sistemi oluşturulmasında önemli rol oynayabilir. Gereç ve Yöntemler: Kallus kültür koşulları farklı hormonal konsantrasyonlarda optimize edilmişlerdir. Üç büyüme regülatörü, 2,4-diklorofenoksiasetik asit (2,4-D), 6-benzilaminopurin (BAP) ve zeatin farklı konsantrasyonlarda ve bileşimlerde kullanılmıştır. En yüksek kallus rejenerasyonu (%90) 2.5 mg/L 2,4-D konsantrasyonunda, en düşük büyüme ise 1.5 mg/L zeatin ve 1.0 mg/L BAP bileşiminde gözlenmiştir. Kallus hücrelerinden patates bitkisinin rejenere edilmesinde en iyi sonuç 1.0 mg/L BAP ve 1.5 mg/L indol asetik asit eklenen Murashige ve Skoog temel besiyerinde elde edilmiştir. İn vitro kültürde farklı hormonal konsantrasyonlarda büyütülen kalluslardaki genetik varyasyon, RAPD yöntemi ile değerlendirilmiştir. Bulgular: On farklı dekamer oligonükleotid primeri, 111 tekrarlanabilir amplifiye ürün oluşturmuştur. Multivaryasyonun numerik taksonomi sistemi yazılımındaki Simqual alt-programı ile hesaplanan benzerlik katsayı değerleri 0.419 ile 0.838 arasında bulunmuştur. Küme analizi sonucu 5 örnek, iç ve dış olmak üzere 2 gruba ayrılmıştır. Maksimum polimorfik bantlar, kallus kültürlerinde 1.5 mg/L zeatin ve 1.0 mg/L BAP bileşimi kullanımında gözlenmiştir. Sonuç: Bulgular, in vitro kültürde büyütülen kallluslardaki genetik varyasyonun değerlendirilmesinde, RAPD’nin etkili bir yöntem olduğunu göstermektedir. Çıkar Çatışması: Yazarların çıkar çatışması bulunmamaktadır. Anahtar Kelimeler: Solanum tuberosum, somaklonal varyasyon, in vitro kültür, RAPD. 296 ISSN 1303–829X (electronic) 0250–4685 (printed) Introduction Potato (Solanum tuberosum L.) of family Solanaceae is one of the economically valuable vegetables worldwide [1]. For research purpose, potato plantlets are in vitro propagated to obtain multiple copies in limited time period. In vitro propagation of potato is beneficial in solving numerous difficulties linked with cultivation and productivity. For genetic modification in potato, in vitro regeneration is valuable method to produce multiple copies of the plant. Moreover, high yields of disease free potato plantlets can be produced. Tissue culture procedure leading to great cellular reprogramming level may be a consequence of increased somaclonal variations [2]. Earlier, Labra et al. [3] reported various somaclonal variations in transgenic Arabidopsis thaliana plants resulted from callus formation. Somaclonal variation in potato calli can be utilized to find suitable variants with desired characters, such as drought or salt stress tolerance [4]. Assessment of somaclonal variation can be helpful in potato breeding technique. Earlier, research studies have been conducted in sweet potato for salinity tolerance by evaluating the extent of somaclonal variation in regenerated plants [5]. It has been reported that somaclonal variation can generate disease resistance in potato. In this context, Rosenberg et al. [6] carried out a study to identify variants with early and late blight tolerance. The food value in terms of quality and quantity, defense strategy against infectious agents and genetic makeup for desired traits in potato can be improved through biotechnological practices as tissue culture and genetic transformation [7]. In potato transformation, early identification of somaclonal variants can be beneficial in eliminating undesired variants that may affect morphological characters and agronomic functions. The propagation method in various plants results in repeated occurrence of somaclonal genetic variation [8]. Genetic variations can be effectively revealed through random amplification of polymorphic DNA (RAPD) that has been confirmed as a highly valuable technique in this aspect [9]. According to Kaeppler et al. [10], somaclonal genetic variation results from micropropagated plant cultures. Genetic likeness and contrasts in plants propagated through tissue culture have been discovered by the productive application of RAPD [11-14]. In plant tissue culture system the rate of somaclonal variation enhances with the increase of subcultures in micropropagation protocols [15]. Biswas et al. [16] applied random amplification of polymorphic DNA technique for assessing the genetic fidelity in strawberry cultures by investigating three successive subclones of in vitro propagated strawberry. Earlier, Vasconcelos et al. [17] indicated random amplification of polymorphic DNA as a practically accessible method used for the identification of somaclonal variation in in vitro cultured maize plant and it was concluded that greater extend of somaclonal variation occurs Turk J Biochem, 2011; 36 (4) ; 296–302. during the callus development stage due to prolonged culturing duration and growth regulators utilized for callusing as compared to general plant regeneration. Thawaro and Te-chato [18], utilized random amplification of polymorphic DNA technique to confirm hybridization for different groupings of hybrid of oil palm half seeds utilized in the investigation. Similarly, various plants that are at the risk of becoming extinct as Anisodus tanguticus [19], Neolitsea sericea [20], Heptacodium miconioides [21] have been analyzed through random amplification of polymorphic DNA for evaluating genetic level variations. The main objective of the present research was to develop an efficient callus induction and regeneration protocol for Solanum tuberosum var. desiree and to investigate genetic variations from in vitro propagated calli maintained at different hormonal concentrations and combinations using RAPD markers. Material and Methods In vitro plant propagation In vitro cultures of Solanum tuberosum var. desiree were maintained by optimizing a regeneration protocol. Nodal segments were cultured on MS basal media [22] supplemented with 30 g/L sucrose and 1.5 mg/L gibberellic acid (GA 3) for plant regeneration. Inoculation was done in test tubes with one node per tube. The multiplication cultures were maintained in a growth chamber at 25°C under cool white fluorescent light (2000 LUX) and a photoperiod regime of 16 hrs light and 8 hrs dark. Shoot growth and multiplication rate were examined after every other day until the shoots reached 8-10 cm in size. Full length shoots were regularly sub-cultured by shifting on fresh regeneration media. Callus induction and regeneration Nodal segments from tissue cultured Solanum tuberosum var. desiree, used as explants were inoculated on callus induction media by using 2,4-Dichlorophenoxyacetic acid (2,4-D), 6-Benzylaminopurine (BAP) and zeatin in different combinations and concentrations (Table 1). The growth rate of callus was recorded. The healthy calli were transferred on fresh media and sub-cultures were established. Callus DNA extraction Genomic DNA was isolated from five samples of callus tissues growing on different combinations of growth hormones. Cetyl Trimethyl Ammonium Bromide (CTAB) method illustrated by Richards [23] was used for DNA isolation. DNA was quantified by spectrophotometric analysis and DNA purity was calculated from OD260/OD280 ratio that was 1.7. Then the DNA samples were checked by running them on 1% agarose gel prepared in 0.5X Tris Acetate Ethylene Diamine Tetra Acetic Acid (TAE) buffer. 297 Munir et al Plant regeneration from callus Callus tissue was shifted to the regeneration media. MS basal media supplemented with different concentrations of growth regulators Indole acetic acid (IAA), BAP and GA 3 (Table 2) were used. RAPD markers RAPD amplifications were carried out by using ten decamer RAPD primers from OPC series, OPC1-OPC10 (Table 3). PCR reaction was optimized by increasing the annealing temperature in 0.5ºC increments in successive optimization runs. Polymerase chain reaction (PCR) mixture of 25µl was prepared by using 25 ng/ µl of genomic DNA template (40 ng/µl determined by spectrophotometry), 25 pmol primer, 12.5 µl 2x PCR master mixture and 10.5 µl of PCR water (MBI Fermentas). Polymerase chain reaction conditions employed for the amplification were initial denaturation at 94ºC for 1 minute followed by 44 cycles of denaturation at 94ºC for 30 seconds, annealing at 35ºC, 35.5ºC, 36ºC, 36.5ºC, 37ºC, 37.5ºC, 38ºC, 38.5ºC, 39ºC, 39.5ºC and 40ºC for 1 minute and extension at 72ºC for 2 minutes with a final extension for 7 minutes at 72ºC in a gradient MultiGene Thermal Cycler (Labnet). Polymerase chain reaction generated amplimers were separated on 1.5% agarose gel prepared in 0.5X TAE buffer. Gel was stained with ethidium bromide (0.6 mg/ml) solution and gel documentation was conducted by using Dolphin Doc Plus Gel Image System (Wealtec). Table 1. Callus texture and rate of development at different hormonal concentrations optimized. Samples Explants Growth Hormone (mg/l) Rate of Callusing (%) Callus Texture 1 Nodes 2,4-D – 2.5 90 Friable, soft 2 Nodes 2,4-D – 2.0 80 Friable, soft 3 Nodes 2,4-D – 3.0 70 Soft, watery 4 Nodes BAP – 1.0 + 2,4-D – 2.0 50 Friable 5 Nodes Zeatin – 1.5 + BAP – 1.0 35 Hard Table 2. Regeneration media containing different concentrations of IAA, GA3 and BAP for potato plant culturing from callus tissue. Regeneration Media Combinations Growth Regulators mg/l IAA GA3 BAP R1 1.0 - 1.0 R2 1.5 - 1.0 R3 - 1.0 1.5 R4 1.0 2.0 - Table 3. Primers used in RAPD analysis Sr. No. Name Sequence 1 OPC1 5’-TTCGAGCCAG -3’ 2 OPC2 5’-GTGAGGCGTC -3’ 3 OPC3 5’-GGGGGTCTTT -3’ 4 OPC4 5’-CCGCATCTAC -3’ 5 OPC5 5’-GATGACCGCC -3’ 6 OPC6 5’-GAACGGACTC -3’ 7 OPC7 5’-GTCCCGACGA -3’ 8 OPC8 5’-TGGACCGGTG -3’ 9 OPC9 5’-CTCACCCTCC -3’ 10 OPC10 5’-TGTCTGGGTG -3’ Turk J Biochem, 2011; 36 (4) ; 296–302. 298 Munir et al Results Micropropagation High quality potato explants were regenerated in good number (Figure 1) with an efficient high frequency protocol optimized by using 1.5 mg/L GA 3. There was no bacterial or fungal contamination observed and the cultures obtained were 100% contamination free. Potato callus was produced by using different types of growth regulators in variable concentrations. Callus growth was affected by different explants used and various concentrations of growth hormones used. Callus development in terms of mass and weight was high with nodal segments used as explants while leaves as explants revealed low callus growth. It was observed that 2.5 mg/L of 2,4-D revealed best results showing 90% callus production. Callus production was 80% and 70% by using 2.0 mg/L and 3.0 mg/L of 2,4-D, respectively. Combination of BAP 1.0 mg/L and 2,4-D 2.0 mg/L resulted in 50% callus growth while Zeatin 1.5 mg/L and BAP 1.0 mg/L combination gave 35% callus development (Figure 2). Graphical representation of percentage growth of callus at various hormonal concentrations was analyzed (Figure 3). The effects of different growth regulators on potato callus production have been summarized in Table 1. Using callus cells, whole potato plantlets were successfully regenerated (Figure 4). IAA, GA 3 and BAP were used in different concentrations (Table 2) for potato plant culturing from callus tissue. On the basis of results obtained, it was observed that MS basal media supplemented with 1.0 mg/L BAP and 1.5 mg/L IAA showed best regeneration potential from callus tissue utilized as explants. Fig. 1. In vitro propagated S. tuberosum var. desiree on MS basal media. Fig. 2. Healthy potato callus developed from nodes through in vitro propagation with different hormonal concentrations. A: 2.5 mg/L of 2,4-D; B: 2.0 mg/L of 2,4-D; C: 3.0 mg/L of 2,4-D; D: 1.0 mg/L BAP and 2.0 mg/L 2,4-D; E: 1.5 mg/L Zeatin and 1.0 mg/L BAP. RAPD Analysis RAPD primers were applied to evaluate somaclonal genetic variability in five different samples of potato calli obtained through in vitro propagation at different hormonal combinations and concentrations (Table 1). There was difference in the intensity and resolution of banding pattern at different annealing temperatures. At 35ºC, 35.5ºC and 36ºC there were faint bands while sharp bands were observed at 36.5ºC. A gradual decrease in band intensity was observed with further rise of temperature at 37ºC, 37.5ºC, 38ºC, 38.5ºC, 39ºC and 39.5ºC, while at 40ºC there were no bands. All of the ten primers (Table 3) have produced sharp DNA bands at annealing temperature of 36.5ºC. In total 111 reproducible bands were generated with ten primers. The number of bands and percentage of polymorphism generated have been given in Table 4. The banding pattern of amplified DNA samples ranged from 200 bp to 1500 bp in size. Six primers OPC2, OPC3, OPC5, OPC7, OPC8 and OPC 9 resulted in some polymorphism while OPC1, OPC4, OPC6 and OPC10 primers gave monomorphic bands. Figure 5 is a representative profile of RAPD analysis indicating polymorphic bands generated with OPC5, OPC7 and OPC8 primers. Among ten primers, OPC5 produced maximum number of bands (20) from five Turk J Biochem, 2011; 36 (4) ; 296–302. Fig. 3. Comparison of callus growth rate at different hormonal concentrations and combinations. Fig. 4. Whole potato plant regeneration from callus tissue. 299 Munir et al Fig. 5. Representative RAPD profile of genomic DNA isolated from in vitro propagated potato callus at five different hormonal concentrations with OPC5, OPC7 and OPC8 primers. 1: callus sample 1 (2,4-D 2.5 mg/L) 2: callus sample 2 (2,4-D 2.0 mg/L) 3: callus sample 3 (2,4-D 3.0 mg/L) 4: callus sample 4 (BAP 1.0 mg/L and 2,4D 2.0 mg/L) 5: callus sample 5 (Zeatin 1.5 mg/L and BAP 1.0 mg/L). DNA samples analyzed, while OPC1 resulted in minimum number of amplified bands (5). Minimum polymorphic bands were found in sample 2 (2,4-D 2.0 mg/L), while maximum number of polymorphic bands were resulted in sample 5 (Zeatin 1.5 mg/L and BAP 1.0 mg/L). Highly reproducible banding patterns were resulted for PCR runs operated over a period of one month. For good reproducibility in RAPD analysis, the experiments were repeated three times. Further, 2x PCR master mix (MBI Fermentas) was used for amplification reactions instead of using PCR mixture made by adding individual components separately to avoid errors that can affect reproducibility. The reproducibility of RAPD pattern was calculated according to the computation done by Daya et al. [24]. In our RAPD analysis the percentage reproducibility was 97%. The similarity coefficients as estimated using Simqual subprogram of NTSYS-pc software indicated maximum similarity (0.838) between the sample 1 (2,4-D 2.5 mg/L) and sample 3 (2,4-D 2.0 mg/L). However, the minimum genetic similarity was observed (0.419) between the sample 3 (2,4-D 3.0 mg/L) and sample 5 (Zeatin 1.5 1.0 mg/L and BAP 1.0 mg/L) (Table 5). The phylogenetic cluster analysis was conducted with Sequential Agglomerative Hierarchical and Nested clustering (SHAN) from the NTSYS-pc statistical package (version 2.02). The cladogram comprised of an in group and an out group (Figure 6). In group showed two sub-groups, in which sub-group 1 comprised of sample 1 and 3 with 83% genetic relationship, while sample 2 and 4 (Table1) formed the sub-group 2 with 81% genetic similarity (Figure 6). The out group represented by the sample 5 that appeared to form a separate group. In case of sample 1, 2, 3 and 4 having 2,4-D 2.5 mg/L, 2,4-D 2.0 mg/L, 2,4-D 3.0 mg/L and BAP 1.0 mg/L + 2,4-D 2.0 mg/L, respectively, forming an in group, 2,4-D was a common hormone. Sample 5 with Zeatin 1.5 mg/L and BAP 1.0 mg/L separated from rest of the samples 2,4-D was not present, so different types of growth regulators may be the cause of genetic variability. Sample 5 showed low rate of callus growth (35%) and required maximum culturing period. A number of factors as culturing time period and culturing conditions may result in genetic instability. Turk J Biochem, 2011; 36 (4) ; 296–302. Fig. 6. Dendrogram generated by the amplified products of five callus samples by 10 OPC primers. Growth regulators are the main components of media that can affect the in vitro culturing in terms of growth rate, therefore the optimization of their concentration is the key requirement. As shown by the present data, 5 mg/L GA3 revealed maximum micropropagation of potato plant while for potato callus 2.5 mg/L of 2,4-D showed maximum callusing. The genetic instability or variations in in vitro cultures can be analyzed through RAPD markers. It has been observed that the rate of polymorphism increases with the increase of culturing time period. According to present results the sample 5 (Zeatin 1.5 mg/L and BAP 1.0 mg/L) required maximum time period for callus production and resulted in maximum polymorphic bands that indicated somaclonal genetic variation was high and occurred in calli cultures by the use of hormonal combination of Zeatin 1.5 mg/L and BAP 1.0 mg/L. Discussion Potato plant cultures were maintained by using nodal/intermodal segments as explants. In earlier studies, Sarker and Mustafa [25] and Haque et al. [26] reported that for in vitro potato plant propagation nodal segments can show multiple shoot production. In another report, Bordallo et al. [27] analyzed somaclonal genetic variation by random amplification of polymorphic DNA analysis in potato callus. The authors found that somaclonal variations were induced by different growth regulators used for callus induction. Chakrabarti et al. [28] investigated the evaluation of fingerprinting consistency in potato through RAPD by using two potato varieties from greenhouse and four in vitro propagated cultivars. They reported more than 90% fingerprint likeness among various in vitro generated tissues from a specific variety that suggested the usefulness of random amplification of polymorphic DNA fingerprints for the detection of potato cultivars with high accuracy. In our results, 33 polymorphic bands were produced by six OPC primers (OPC2, OPC3, OPC5, OPC7, OPC8 and OPC 9), while 73 monomorphic bands were generated by remaining four OPC primers (OPC1, OPC4, OPC6 and OPC10). It was observed that the overall percentage of polymorphism is 30% (Table 4). There was a 300 Munir et al Table 4. Number of bands and percentage of polymorphism generated by using 10 OPC primers for RAPD analysis. Total Bands Polymorphic Monomorphic Bands Rare Bands Unique Bands Polymorphism S.No. Primers 1 OPC 1 5 5 0 0 0 0 2 OPC2 17 10 6 1 0 35 3 OPC3 10 5 5 0 0 50 4 OPC4 5 5 0 0 0 0 5 OPC5 20 10 8 2 0 40 6 OPC6 5 5 0 0 0 0 Bands (%) 7 OPC7 15 5 8 2 0 53 8 OPC8 19 15 4 0 0 21 9 OPC9 10 8 2 0 0 20 10 OPC10 5 5 0 0 0 0 111 73 33 5 0 30 Total Table 5. Similarity coefficient values for five samples analyzed through Simqual subprogram of NTSYS-pc software. Sample No 1 2 3 1 1.0000000 2 0.7096774 1.0000000 3 0.8387097 0.8064516 4 0.6451613 0.8064516 0.7419355 1.0000000 5 0.4838710 0.5483871 0.4193548 0.4838710 5 1.0000000 difference in intensity of polymorphic bands generated by different primers. The bands generated by OPC7 and OPC8 primers were more intense as compared to those resulted from OPC2, OPC3, OPC5 and OPC 9. Difference in band intensity occurs because each primer hybridizes in different extents to target DNA and the undefined target DNA may exist in multiple copies per genome. Similar results have already been reported by Skroch and Nienhuis [29] that RAPD bands amplified by one primer vary in intensity from those amplified by another primer. Earlier, random amplification of polymorphic DNA analysis was conducted on the genetic resources of Plantago spp to access genetic variability [30]. It was reported that variation in growth regulators concentrations and their proportion in culture media, culturing time period, nutrients [31], plant species, explants used and culturing conditions [32, 33] can be the factors responsible for somaclonal genetic variation in micropropagated plants. Detection of somaclonal variations by random amplification of polymorphic DNA analysis has been reported from other plants as well. One such example is from in vitro propagated banana cultivar where genetic stability was confirmed by monomorphic banding pattern shown by 50 RAPD primers [It was concluded from our experimentation that various hormonal concentrations/combinations and culturing duration were the main factors contributing the somaclonal genetic variability in micropropagated potato calli. As our results showed Turk J Biochem, 2011; 36 (4) ; 296–302. 4 1.0000000 that maximum culturing period in case of callus production by Zeatin (1.5 mg/L) and BAP (1.0 mg/L) resulted in high genetic variability in terms of polymorphism. Therefore, random amplification of polymorphic DNA analysis can be a reliable tool for the assessment of somaclonal variation in Solanum tuberosum. Acknowledgements We are thankful to Pakistan Science Foundation, Islamabad, Pakistan for providing financial assistance for this research work through the project No. C-QU/Bio (419). Conflict of Interest The authors have no conflict of interest. References [1] Solmon-Blackburn RM, Baker H. (2001) Breeding resistance virus potatoes (Solanum tuberosum L.) a review of traditional and molecular approaches. Heridity 86:17-35. [2] Morcillo F, Gagneur C, Adam H, Richaud F, Singh R, et al. (2006) Somaclonal variation in micropropagated oil palm. Characterization of two novel genes with enhanced expression in epigenetically abnormal cell lines and in response to auxin. Tree Physiol 26(5):585-94. [3] Labra M, Vannini C, Grassi F, Bracale M, Balsemin M, et al. (2004). Genomic stability in Arabidopsis thaliana transgenic plants obtained by floral dip. Theoretical Appl Genet 109(7):1512-8. 301 Munir et al [4] Ehsanpour AA, Madani S, Hoseini M. (2006) Detection of somaclonal variation in potato callus induced by UV-C radiation using RAPD-PCR. General Appl Plant Physiol 33(1-2):3-11. [5] Anwar N, Kikuchi A, Watanabe KN. (2010) Assessment of somaclonal variation for salinity tolerance in sweet potato regenerated plants. African J Biotech 9(43):7256-65. [6] Rosenberg V, Tsahkna A, Kotkas K, Tähtjärv T, Särekanno M, et al. (2010) Somaclonal variation in potato meristem culture and possibility to use this phenomenon in seed potato production and breeding. Agronomy Res 8:697-704. [23] Richards EJ. (1997) Preparation of plant DNA using CTAB. In: Short Protocols in Molecular Biology (Eds: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K.) 3rd Ed. New York, John Wiley pg. 2.10-11. [24] Ranamukhaarachchi DG, Kane ME, Guy CL, Li QB. (2000) Modified AFLP technique for rapid genetic characterization in plants. BioTechniques 29(4):858-66. [25] Sarker RH, Mustafa BM. (2002) Regeneration and Agrobacterium-mediated genetic transformation of two indigenous potato varieties of Bangladesh. Plant Tiss Cult 12:69-77. [7] Jayaree T, Pavan U, Ramesh M, Rao AV, Reddy KJM, et al. (2001) Somatic embryogenesis from leaf culture of potato. Plant Cell Tiss Org 64:13-7. [26] Haque AU, Samad MA, Shapla TL. (2009) In vitro callus initiation and regeneration of potato. Bangladesh J Agril Res 34(3):449-56. [8] Chuang SJ, Chen CL, Chen JJ, Chou WY, Sung JM. (2009) Detection of somaclonal variation in micro-propagated Echinacea purpurea using AFLP marker. Scientia Hort 120:121-6. [27] Bordallo PN, Silva DH, Maria J, Cruz CD, Fontes EP. (2004) Somaclonal variation on in vitro callus culture potato cultivars. Horticultra Bras 22:300-4. [9] Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tinge SV. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18(22):65. [28] Chakrabarti SK, Pattanayak D, Sarkar D, Chimote VP, Naik PS. (2006) Stability of RAPD fingerprints in potato: Effect of source tissue and primers. Biologia Plant 50(4):531-6. [10]Kaeppler SM, Kaeppler HF, Rhee Y. (2000) Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43:179-88. [29] Skroch PW, Nienhuis J. (1995) Qualitative and quantitative characterization of RAPD variation among snap bean (Phaseolus vulgaris) genotypes. Theor Appl Genet 91(6-7):1078-85. [11] Carvalho LC, Goulao L, Oliveira C, Goncalves JC, Amancio S. (2004) RAPD assessment for identification of clonal identity and genetic stability of in vitro propagated chestnut hybrids. Plant Cell Tiss Org 77(1):23-7. [30] Singh N, Lal RK, Shasany AK. (2009) Phenotypic and RAPD diversity among 80 germplasm accessions of the medicinal plant isabgol (Plantago ovata, Plantaginaceae). Genetics Mol Res 8(3):1273-84. [12] Martins M, Sarmento D, Oliveira MM. (2004) Genetic stability of micropropagated almond plantlets as assessed by RAPD and ISSR markers. Plant Cell Rep 23(7):492-6. [31] Modgil M, Mahajan, K, Chakrabarti SK, Sharma DR, Sobti RC. (2005) Molecular analysis of genetic stability in micropropagated apple rootstock MM106. Scientia Horti 104(2):151-60. [13] Ramage CM, Borda AM, Hamill SD, Smith MK. (2004) A simplified PCR test for early detection of dwarf off-types in micropropagated Cavendish banana (Musa spp.AAA). Scientia Hortic 103(1):145-51. [14] Modgil M, Mahajan K, Chakrabarti SK, Sharma DR, Sobti RC. (2005) Molecular analysis of genetic stability in micropropagated apple rootstock MM106. Scientia Horti 104(2):151-60. [15] Gaafar RM, Saker MM. (2006) Monitoring of cultivars identity and genetic stability in strawberry varieties grown in Egypt. World J Agric Sci 2(1):29-36. [32] Karp A, Bright SWJ. (1985) On the causes and origins of somaclonal variation. Oxford Surveys of Plant Mol Cell Biol 2:199-234. [33] Shuangxia J, Ramesh M, Huaguo Z, Lili T, Zhongxu L, et al. (2008) Detection of somaclonal variation of cotton (Gossypium hirsutum) using cytogenetics, flow cytometry and molecular markers. Plant Cell Rep 27(8):1303-16. [34] Venkatachalam L, Sreedhar RV, Bhagyalakshmi N. (2007) Genetic analyses of micropropagated and regenerated plantlets of banana as assessed by RAPD and ISSR markers. In Vitro Cell Dev Biol Plant 43:267–74. [16] Biswas MK, Dutt M, Roy UK, Islam R, Hossain M. (2009) Development and evaluation of in vitro somaclonal variation in strawberry for improved horticultural traits. Scientia Horti 122(3):409-16. [17] Vasconcelos MJV, Antunes MS, Barbosa SM, Carvalho CHS. (2008) RAPD analysis of callus regenerated and seed grown plants of Maize (Zea mays L.). Revista Bras Milh Sorgo 7(2):93-104. [18] Thawaro S, Te-chato S. (2008) RAPD (random amplified polymorphic DNA) marker as a tool for hybrid oil palm verification from half mature zygotic embryo culture. Journal Agri Tech 4(2):165-76. [19] Zheng W, Wang L, Meng L, Liu J. (2008) Genetic variation in the endangered Anisodus tanguticus (Solanaceae), an alpine perennial endemic to the Qinghai-Tibetan Plateau. Genetica 132(2):123-9. [20] Wang ZS, An SQ, Liu H, Leng X, Zheng JW, et al. (2005) Genetic structure of the endangered plant Neolitsea sericea (Lauraceae) from the Zhoushan archipelago using RAPD markers. Annals Bot 95(2):305-13. [21] Lu HP, Cai YW, Chen XY, Zhang X, Gu YJ, et al. (2006) High RAPD but no cpDNA sequence variation in the endemic and endangered plant, Heptacodium miconioides Rehd. (Caprifoliaceae). Genetica 128(1-3):409-17. [22] Murashige T, Skoog F. (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15:473-97. Turk J Biochem, 2011; 36 (4) ; 296–302. 302 Munir et al