unite de recherche - Faculté de Médecine

Transcription

UNITÉ DE RECHERCHE
UMR 7278
Unité de Recherche sur les Maladies Infectieuses Tropicales
Emergentes (URMITE)
DIRECTEUR : RAOULT Didier
ADRESSE : Faculté de Médecine Site Timone
TELEPHONE : 04 91 32 43 75/04 91 32 44 80
COURRIEL : [email protected]
SITE WEB :
www.mediterranee-infection.com
ECOLE DOCTORALE : Sciences de la Vie et de la Santé (ED 062)
RATTACHEMENTS : AMU (UM63) CNRS (UMR7278)
(Marseille) AP-HM (Pôle 8)
IRD (198) INSERM (U1095)
IRBA
POLES HOSPITALIERS :
2 – Gynépôle Marseille (Intersites)
4 – Réa-Urgences (Nord)
8 - Maladies Infectieuses (Intersites)
10 – Urologie Néphrologie (Conception)
13 – Pédiatrie Médico-Chirurgicale (Intersites)
16 – Cardio-Vasculaire-Thoracique (Intersites)
18 – Biologie (Intersites)
28 – DACCORD (Intersites)
DISCIPLINES D’APPARTENANCES : DS 5 - Biologie,médecine, santé
SPECIALITÉS : Maladies Infectieuses
GESTIONNAIRES UNITÉ : VERIN Francine (CNRS), CORONA Cathy, COMBE Isabelle (AMU),
NADARADJANE Sacy (IRD)
Unité de Recherche.sur les Maladies Infectieuses Tropicales Emergentes (URMITE)
Mise à jour : janvier 2015
1/30
EFFECTIFS
Enseignants-Chercheurs :
38
Chercheurs EPST :
11
Autres Enseignants-Chercheurs et
Chercheurs :
1
BIATSS/ITA :
41
Doctorants
85
PERSONNELS IMPLIQUÉS DANS LA RECHERCHE
Téléphone UM63 MARSEILLE: 04 91 32 43 75
Téléphone IRBA MARSEILLE: 04 91 15 01 24
Téléphone IRD DAKAR : +221338493580
ABAT
ABEILLE
ABOUBAKER OSMAN
ABOUDHARAM
Cédric
Annick
Djaltou
Gérard
Doctorant
TCH
Doctorant
PU
AGHNATIOS
Rita
Doctorant
AHERFI
Sarah
Doctorant
AL BAYSSARI
ALMERAS
Charbel
Lionel
Doctorant
CR DRSSA Toulon
AMPHOUX
Bernard
TCH
ANDRIEU
Véronique
PU
ANGELAKIS
Emmanouil
ARMOUGOM
Fabrice
PRAC
IR
ARMSTRONG
Nicholas
IE
ASMAR
AUDOLY
Shady
Gilles
Doctorant
IR INSERM
AZAROUC
Fayza
TCH
AZZA
Said
IGR
BA
El Hadji Konko Ciré
IE
BA
BACHAR
El Hadji KC
Dipankar
Doctorant
IE CNRS
BADIAGA
Sékéné
PH
BAJRAI
BAPTISTE
Leena
Emeline
Doctorant
ING CDD
BARDET
BARRACCO
Lucie
Priscilla
Doctorant
Adjoint Administratif Hosp.
BARRASSI
Lina
TCH
BASCO
Leonardo
DR
2/30
BASSENE
Hubert
IR
BAUDOIN
Jean-Pierre
ING CDD
BECHAH
Yassina
IR INSERM
BEDOTTO
Marielle
IE
BEKLIZ
Meriem
Doctorant
BELHARETH
BEN AMARA
Rym
Amira
Doctorant
IGE
BENAKHLA
Hmed
PU
BENAMAR
BENYACOUB
Samia
Slim
Doctorant
PU
BERENGER
Jean-Michel
TCH
BERLAND
Yvon
PU-PH
BEYE
BITAM
Mamadou
Idir
Doctorant
PU (HDR)
BITTAR
Fadi
MCF
BLANC-TAILLEUR
Caroline
IGE CDD
BOGREAU
Hervé
CR contractuel IRBA
BORG
Audrey
TCH
BOU KHALIL
Jacques
Doctorant
BOUDJEMA
BOUGANALI
Sophia
Charles
Doctorant
TCH
BOUZID
BREGEON
Feriel
Fabienne
Doctorant
MCF
BRETELLE
Florence
MCF
BRIOLANT
Sébastien
CR contractuel IRBA
BROSSARD
Catherine
TCH
BROUQUI
Philippe
PU-PH
BUFFAT
Christophe
MCF
BUFFET
Sylvain
IE
BZDRENGA
CAL
Janek
Céline
Doctorant
TCH
CAMOIN
Laurence
MCU-PH
CANTIE
CAPUTO
Cécilia
Aurélia
Doctorant
IE CDD
CAPUTO
CARUSO
Aurélia
Gilbert
Doctorant
TSH
CASALTA
Jean-Paul
PH
CASSIR
CHABRIERE
CHAUVANCY
CHEVALIER
Nadim
Eric
Gilles
Morgane
Doctorant
PU
AI
TCH
CIMMINO
COLLIN
Teresa
Juline
Doctorant
TCH
COLSON
Philippe
PHU
COMBE
CORONA
Isabelle
Cathy
IGE
AJDT
COSTAGLIOLA
Olivier
TCH
CROCE
Olivier
IR CNRS
3/30
DAHMANI
Mustapha
Doctorant
D'AMATO
DAVOUST
Felicetta
Bernard
Doctorant
CR DRSSA Toulon
DECLOQUEMENT
Philippe
IE
DELAUNAY
Valérie
CR1
DELERCE
Jeremy
ING CDD
DESNUES
Christelle
CR CNRS
DI PINTO
Fabrizio
ING CDD
DIAGNE
Nafissatou
IE
DIALLO
Aldiouma
IR Médecin
DIATTA
Georges
IR
DIEDHIOU
Seynabou Mocotte
Doctorant
DIEME
DIEYE EP BA
Constentin
Fambaye
Doctorant
TCH
DIONE
DIOUF
Niokhor
Papa Niokhor
Doctorant
TCH
D'JOURNO
Benoît
PHU
DODDOLI
Christophe
PHU
DOMINGO
Ivana
DOUCOURE
Souleymane
IE
DOUDON
Emilie
TCH
DRANCOURT
Michel
PU-PH
DRAY
Sandrine
Doctorant
DRISSI
DUBOURG
Fatima
Grégory
Doctorant
PHU
DUBOURG
DUCLOS
Grégory
Nathalie
Doctorant
TCH
DULAC
Magalie
TCH
EDOUARD
Sophie
AHU
EHOUNOUD
EL KARKOURI
Bile Cyrille Herve
Khalid
Doctorant
IGR
ELDIN
ESTEL
Carole
Michelle
Doctorant
TCH
FALL
Bassirou
TCH
FAYE
Alassane
ADT
FAYE
Alassane
ADT
FENOLLAR
FERNANDEZ
FEUERSTEIN
Florence
Marion
Jean-Marc
PU-PH
TCH
FILOSA
FILOSA
Valérie
Véronique
FLAUDROPS
FOREL
Christophe
Jean-Marie
Cadre de santé médicotechnique
IE
PH
FORESTIER
Claire Lise
CR INSERM (HDR)
FOTSO- FOTSO
FOURNIER
Aurélien
Pierre-Edouard
Doctorant
PU-PH
GAMBARELLI
Laure
Cadre administratif
4/30
GAUTRET
Philippe
PH
GHAOUI
GHIGO
Hichem
Eric
Doctorant
CR CNRS (HDR)
GOMEZ
GORRETA
Carine
Rose
Doctorant
Agent d'entretien
GOTTRAU
Anne-Marie
Agent d'entretien
GOURIET
Frédérique
MCU/PH
GRIMALDIER
Clio
TCH
GRISOLI
GROS
Dominique
Thomas
Doctorant
TCH
GUILHOT
HABIB
Elodie
Gilbert
Doctorant
PU-PH
HAMAD
Ibrahim
Doctorant
HEINEMANN
Mellie
Doctorant
HRAIECH
Sami
Doctorant
HUART
Michael
Doctorant
HUYNH
Thi Thuy
Doctorant
IKANGA RETENO
Dorine
Doctorant
JACQUET
JARDOT
Pauline
Priscilla
Doctorant
TCH
JNEID
JUNOY
Joanne
Stéphanie
Doctorant
TCH
KA
KEITA
Mignane Biram
Alpha
Doctorant
TCH
KESHRI
VIVEK
Doctorant
KESTEMAN
Thomas
Doctorant
KODJOVI DODJI
KOWALCZEWSKA
Mlaga
Malgo
Doctorant
IGE
LA SCOLA
Bernard
PU-PH
LABAS
Noémie
TCH CDD
LAFRI
LAGIER
Ismail
Jean-Christophe
Doctorant
AHU
LAJAUNIE
Claire
IE INSERM
LAURENT
Jonathan
TCH
LE PAGE
Stéphanie
Doctorant
LEANGAPICHART
LEBIDEAU
Thongpan
Marion
Doctorant
TCH
LEFFAD
Maya
AI
LEONE
Marc
PU-PH
LEPIDI
Hubert
PU-PH
LEPOLARD
Catherine
TCH
LEULMI
LEVASSEUR
Hamza
Antony
Doctorant
PU
LEVY
Pierre-Yves
PH
LIOTAUD
Gilles
TCH
LO
LONGINOTTI
LOUKHNEVA CUSACK
CHEICKH
Sandrine
Olga
Doctorant
MACE
Helène
Doctorant
5/30
MALEK
MANE
Maliya
Youssouph
Doctorant
TCH
MARIE
Jean-Lou
CR DRSSA Toulon
MATHLOUTHI
MATI
Najla
Marie-Charlotte
Doctorante
TCH
MEDIANNIKOV
Oleg
CR2
MEGE
Jean-Louis
PU-PH
MERHEJ
Vicky
MCF
MILITELLO
Muriel
TCH CDD
MILLION
Matthieu
AHU
MOAL
Valérie
PH
MOUFFOK
Nadjet
PU CHU Oran
MOUREMBOU
NAPPEZ
Gaël
Claude
Doctorant
IGE
NDIAYE
Oussmane
TCH
NDIAYE
Tofène
TCH
NDIAYE
Emilie
TCH
NDIAYE
Timague
TCH
NDIAYE
Prosper
TCH
NEBBAK
N'GUYEN
Amira
Thi Thien
Doctorant
TCH
NIANG
Oumar
TCH
NIARE
Sirama
Doctorant
NKAMGA
Vanessa Demonfort
Doctorant
OKDAH
Liliane
Doctorant
OLAITAN
ORLANDO-PRADINES
OUANEZAR
PAGES
Abiola
Eve
Abdelkrim
Frederic
Doctorant
CR DRSSA
CR DRSSA
PAGNIER
Isabelle
PU-PH (HDR)
PAPAZIAN
Laurent
PU-PH
PAROLA
Philippe
PU-PH (HDR)
PATRICE
Jean-Yves
TCH
PERREAL
Céline
TCH
PINAULT
Lucile
ING CDD
PINOS
PITACCOLO
Sandrine
Micheline
Doctorant
Adm.
PRUDENT
Elsa
ING CDD
PRUDENT
Elsa
Doctorant
RANANAWARE
RAOULT
Dimple Paul
Didier
Doctorant
PU-PH (HDR)
RASCOVAN
Nicolas
IGR
RAYMOND
Pascale
TCH
REYNAUD-GAUBERT
Martine
PU-PH (HDR)
REYNIER
RICHET
Pauline
IGE
Hervé
PAC
RICHEZ
MAGALI
TCH
ROBERT
Catherine
IGR
6/30
ROCH
Antoine
PAC
RODRIGUEZ
Julie
TCH
ROLAIN
Jean-Marc
PU-PH
SAMBOU
Masse
Doctorant
SANGARE
Abdoul Karim
Doctorant
SECK
SENG
EL Hadji
Piseth
Doctorant
SENGHOR
SENGHOR
Bruno
Paul
Doctorant
TCH
SIMON
Fabrice
PH
SOKHNA
Cheikh
CR1
SOTO ALADRO
Alberto
IGE
SOUGOUFARA
Seynabou
Doctorant
SOURRABH
SOW
Jain
Mouhamadou Baba
Doctorant
IE
SRIDHAR
Shruti
Andreas
Doctorant
PU-PH
Elhadji D
TCH
SYLLA
Seydou Nourou
Doctorant
TAHIR
Djamel
Doctorant
TANDINA
Fatalmoudou
Doctorant
TEMMAM
TERRAS
Sarah
Jérôme
Doctorant
AI
THOMAS
Pascal-Alexandre
PU-PH
THOMAS
Laurence
TCH
THUNY
Franck
PU-PH
TIAN
BI DIANGONE Roger
Doctorant
TIDJANI ALOU
Maryam
Doctorant
TOROSSIAN
Danielle
Agent d'entretien
TORRE
TOUATI
Cédric
Caroline
Doctorant
TOURE
Malick
TCH
TRAORE
TROUPLIN
Sory Ibrahima
Virginie
Doctorant
IR CNRS
TUSA
Marie
VALLES
Camille
ASI
VERIN
Francine
TCH CNRS
VERNEAU
VIAL
Jonathan
Emeline
Doctorant
TCH
VIALATTE
Marie Christine
Doctorant
VIKAS
WEBER
Sharma
Pascal
Doctorant
IE CNRS
WOTODJO
WURTZ
Amélé
Nathalie
Doctorant
IGE
ZINGUE
Dezemon
Doctorant
STEIN
SYLLA
PRAC
7/30
PERSONNELS AVEC HDR
ABOUDHARAM
Gérard
MCF
ALMERAS
Lionel
Chercheur contractuel IRBA
BADIAGA
Sékéné
PH
BASCO
Leonardo
DR IRD
BENYACOUB
Slim
PU Université d'Annaba
BERLAND
Yvon
PU-PH
BITAM
Idir
Maître de Recherche à l'Institut Pasteur d'Alger
BREGEON
Fabienne
MCU-PH
BRETELLE
Florence
PU-PH
BROUQUI
Philippe
PU-PH
D’JOURNO
Xavier
PHU
DODDOLI
Christophe
PU-PH
DRANCOURT
Michel
PU-PH
DUBUS
Jean-Christophe
PU-PH
FENOLLAR
Florence
MCU-PH
FOURNIER
Pierre-Edouard
PU-PH
GAUTRET
Philippe
PH
GHIGO
Eric
CR CNRS
HABIB
Gilbert
PU-PH
LA SCOLA
Bernard
PU-PH
LEONE
Marc
PU-PH
LEPIDI
Hubert
PU-PH
MEGE
Jean-Louis
PU-PH
MOTTOLA
Giovanna
MCU (Univ Naples) (HDR)
MOUFFOK
Nadjet
PU CHU Oran
PAPAZIAN
Laurent
PU-PH
PAROLA
Philippe
PU-PH
POUVELLE
Bruno
IGR
PRADINES
Bruno
Chercheur IRBA
RAOULT
Didier
PU-PH
REYNAUD-GAUBERT
Martine
PU-PH
ROCH
Antoine
PU-PH
ROLAIN
Jean-Marc
PU-PH
SIMON
Fabrice
PU HIA
STEIN
Andreas
PU-PH
THOMAS
Pascal-Alexandre
PU-PH
THUNY
Franck
PHU
EQUIPES DE RECHERCHE et THEMATIQUES
EQUIPE : E1 - Unité des Rickettsies et des pathogènes émergents
RESPONSABLE : RAOULT Didier
THEMATIQUE : Découverte des pathogènes émergents. Génomique des rickettsies. Postgénomique. Maladie de Wipple
EQUIPE : E2 - Tools for the detection, identification and characterisation of emerging pathogens
RESPONSABLE : DRANCOURT Michel
THEMATIQUE : Microbiogénomique. Paléomicrobiologie
8/30
EQUIPE : E3 - Infections, gender et pregnancy
RESPONSABLE : GHIGO Eric et MEGE Jean-Louis
THEMATIQUE : Etude ex vivo des réponses immunes innées et adaptatives. Etude du trafic
intracellulaire. Approche intégrée via des modèles animaux spécifiques
EQUIPE : E4 - Microorganismes de l'environnement, pneumonies et bioterrorisme
RESPONSABLE : LA SCOLA Bernard
THEMATIQUE : Nouveaux agents pathogènes de l'eau et étude de la viabilité des microorganisme
dans l'eau. Analyse du transcriptome de Mimivirus. Détection, typage et analyse de la virulence des
agents de bioterrorisme, (Coxiella burnetii, Rickettsia sp. Et Francisella
EQUIPE : E5 - Veille et Approche Entomologique des Maladies Vectorisées Emergentes
RESPONSABLE : PAROLA Philippe
THEMATIQUE : Veille et prise en charge des maladies infectieuses émergentes vectorisées. Veille
sur les microorganismes associés aux anthropodes
EQUIPE : E6 - Mucoviscidoses, microbiote et prise en charge thérapeutique
RESPONSABLE : ROLAIN Jean-Marc
THEMATIQUE : Evaluation de la sensibilité et de la résistance aux agents anti-infectieux.
Détection d'agents infectieux émergents et/ou multi-résistants chez les patients atteints de
mucoviscidose
EQUIPE : E7 - Infections respiratoires sévères émergentes et leur prise en charge
RESPONSABLE : PAPAZIAN Laurent
THEMATIQUE : Identification de nouveaux agents de pneumonies. Modèle expérimental de
pneumonie ; pharmacologie-interactions avec la ventilation mécanique. Optimisation de la prise en
charge des infections respiratoires
EQUIPE : E8 - Maladies tropicales émergentes
RESPONSABLE : PRADINES Bruno
THEMATIQUE : Surveillance et émergence des résistances aux antipaludiques. Développement de
nouveaux médicaments antipaludiques. Amélioration des techniques diagnostiques du paludisme Contact homme-moustique. Plasmodium vivax
EQUIPE : E9 - Equipe émergente : Microbiogénomique
RESPONSABLE : FOURNIER Pierre-Edouard
THEMATIQUE : Génomique bactérienne. Génomique
diagnostiques
comparative.
Evolution.
Application
EQUIPE : E10 - Equipe émergente PathoVirome
RESPONSABLE : DESNUES Christelle
THEMATIQUE : Métagénomique. Ecologie virale. Biodiversité. Pathologies
EQUIPE : E11 - Maladies infectieuses persistantes et émergentes en Afrique de l'Ouest : détection,
épidémiologique et lutte
RESPONSABLE :
THEMATIQUE : Paludisme. Biodiversité des pathogènes émergents
EQUIPE : E12 - Maladies bactériennes vectorisées au Maghreb
RESPONSABLE : BITAM Idir
THEMATIQUE : Surveillances entomologiques et mammalogiques des agents pathogènes.
Détections moléculaires et isolements des agents pathogènes vectorisés. Inventaire des bactéries
vectorisées par les puces et les tiques en Maghreb
EQUIPE : E13 - Bio cristallographie, biotechnologie et enzymologie structurale
RESPONSABLE : CHABRIERE Eric
THEMATIQUE : Diagnostic Clinique (identification de bactéries et organismes, dosage
d’antibiotiques et développement de méthodes (biotypage, protéomique, chromatographie)
EQUIPE : E14 - Molecular Parasitology and signaling
RESPONSABLE : FORESTIER Claire
THEMATIQUE : interactions hôte-pathogènes durant la leishmaniose visecérale.
9/30
EQUIPE: E15 – Genome-wide reconstruction of the evolution of the immune system in vertebrates
RESPONSABLE :ABI-RACHED Laurent
THEMATIQUE : Etude des bases génétiques de la maladie de Whipple, analyse génétique des
planaires, analyse génétique des DING et étude comparative des génomes de Borrelia
PERSONNELS PAR EQUIPE DE RECHERCHE
EQUIPE : E1 - Unité des Rickettsies et des pathogènes émergents
RESPONSABLE : RAOULT Didier
THEMATIQUE : Découverte des pathogènes émergents. Génomique des rickettsies. Postgénomique. Maladie de Wipple
ANGELAKIS
ARMOUGOM
BITTAR
CASALTA
DAVOUST
EDOUARD
FENOLLAR
HABIB
LAGIER
LEVY
MARIE
MERHEJ
MILLION
RAOULT
THUNY
Emmanouil
Fabrice
Fadi
Jean-Paul
Bernard
Sophie
Florence
Gilbert
Jean-Christophe
Pierre-Yves
Jean-Lou
Vicky
Matthieu
Didier
Franck
ITER
IR IRD
MCF
PH
Chercheur DRSSA Toulon
AHU
MCU-PH
PU-PH
AHU
PH
Chercheur DRSSA Toulon
MCF
AHU
PU-PH
PHU
EQUIPE : E2 - Tools for the detection, identification and characterisation of emerging pathogens
RESPONSABLE : DRANCOURT Michel
THEMATIQUE : Microbiogénomique. Paléomicrobiologie
ABOUDHARAM Gérard
DRANCOURT Michel
MCF
PU-PH
EQUIPE : E3 - Infections, gender et pregnancy
RESPONSABLE : GHIGO Eric et MEGE Jean-Louis
THEMATIQUE : Etude ex vivo des réponses immunes innées et adaptatives. Etude du trafic
intracellulaire. Approche intégrée via des modèles animaux spécifiques
BEN AMARA
BRETELLE
BUFFAT
CAPO
GHIGO
LEONE
LEPOLARD
MEGE
TROUPLIN
Amira
Florence
Christophe
Christian
Eric
Marc
Catherine
Jean-Louis
Virginie
IGE AMU
PU-PH (HDR)
MCU-PH
CR INSERM (HDR)
CR CNRS (HDR)
PU-PH (HDR)
ASI AMU
PU-PH (HDR)
IR CNRS
EQUIPE : E4 - Microorganismes de l'environnement, pneumonies et bioterrorisme
RESPONSABLE : LA SCOLA Bernard
THEMATIQUE : Nouveaux agents pathogènes de l'eau et étude de la viabilité des microorganisme
dans l'eau. Analyse du transcriptome de Mimivirus. Détection, typage et analyse de la virulence des
agents de bioterrorisme, (Coxiella burnetii, Rickettsia sp. Et Francisella
LA SCOLA
BERLAND
Bernard
Yvon
PU-PH
PU-PH
10/30
COLSON
LEPIDI
MOAL
PAGNIER
Philippe
Hubert
Valérie
Isabelle
PU-PH
PU-PH
PH
MCF
EQUIPE : E5 - Veille et Approche Entomologique des Maladies Vectorisées Emergentes
RESPONSABLE : PAROLA Philippe
THEMATIQUE : Veille et prise en charge des maladies infectieuses émergentes vectorisées. Veille
sur les microorganismes associés aux anthropodes
BADIAGA
BROUQUI
GAUTRET
PAROLA
SIMON
SOCOLOVSCHI
Sékéné
Philippe
Philippe
Philippe
Fabrice
Christina
PH
PU-PH
PH
PU-PH
PU HIA
PAC
EQUIPE : E6 - Mucoviscidoses, microbiote et prise en charge thérapeutique
RESPONSABLE : ROLAIN Jean-Marc
THEMATIQUE : Evaluation de la sensibilité et de la résistance aux agents anti-infectieux.
Détection d'agents infectieux émergents et/ou multi-résistants chez les patients atteints de
mucoviscidose
ANDRIEU
Véronique
BARNAUD
André
COMMOT
Muriel
DUBUS
Jean-Christophe
HADJADJ
Linda
REYNAUD-GAUBERT
Martine
ROLAIN
Jean-Marc
MCF
TCH AMU
TCH AMU
PU-PH
TCH AMU
PU-PH
PU-PH
EQUIPE : E7 - Infections respiratoires sévères émergentes et leur prise en charge
RESPONSABLE : PAPAZIAN Laurent
THEMATIQUE : Identification de nouveaux agents de pneumonies. Modèle expérimental de
pneumonie ; pharmacologie-intercations avec la ventilation mécanique. Optimisation de la prise en
charge des infections respiratoires
BREGEON
D'JOURNO
DODDOLI
FOREL
PAPAZIAN
ROCH
THOMAS
Fabienne
Benoît
Christophe
Jean-Marie
Laurent
Antoine
Pascal
MCU-PH
PHU
PU-PH
PH
PU-PH
PU-PH
PU-PH
EQUIPE : E8 - Maladies tropicales émergentes
RESPONSABLE : PRADINES Bruno
THEMATIQUE : Surveillance et émergence des résistances aux antipaludiques. Développement de
nouveaux médicaments antipaludiques. Amélioration des techniques diagnostiques du paludisme Contact homme-moustique. Plasmodium vivax
ALMERAS
Lionel
AMALVIC
Remy
BASCO
Leonardo
BOUCHIBA
Housem
BOGREAU
Hervé
JAUFFRE-MARIN Adeline
MOKRANE
Madjid
PASCUAL
Aurélie
POUVELLE
Bruno
TCH IRBA Marseille
DR IRD
TCH IRBA Marseille
TCH IRBA Marseille
TCH IRBA Marseille
IGR IRBA Marseille
IGR AMU
11/30
PRADINES
TRAVERS
Bruno
Dominique
Chercheur IRBA
TCH IRBA Marseille
EQUIPE : E9 - Equipe émergente : Microbiogénomique
RESPONSABLE : FOURNIER Pierre-Edouard
THEMATIQUE : Génomique bactérienne. Génomique
diagnostiques
FOURNIER
GOURIET
Pierre-Edouard
Frédérique
comparative.
Evolution.
Application
PU-PH
MCU-PH
EQUIPE : E10 - Equipe émergente PathoVirome
RESPONSABLE : DESNUES Christelle
THEMATIQUE : Métagénomique. Ecologie virale. Biodiversité. Pathologies
DESNUES
Christelle
CR CNRS
MONTEIL
Sonia
IE CNRS
TEMMAM
Sarah
IR CNRS
FANCELLO
Laura
DOCTORANT
POPGEORGIEV
Nikolay
POST-DOCTORANT
EQUIPE : E11 - Maladies infectieuses persistantes et émergentes en Afrique de l'Ouest : détection,
épidémiologique et lutte
RESPONSABLE :CHEIKH Sokna
THEMATIQUE : Paludisme. Biodiversité des pathogènes émergents
EQUIPE : E12 - Maladies bactériennes vectorisées en Maghreb
RESPONSABLE : BITAM Idir
THEMATIQUE : Surveillances entomologiques et mammalogiques des agents pathogènes.
Détections moléculaires et isolements des agents pathogènes vectorisés. Inventaire des bactéries
vectorisées par les puces et les tiques en Maghreb
BENYACOUB
BITAM
MOUFFOK
BENAKHLA
Slim
Idir
Nadjet
Hmed
PU Université d'Annaba
Maître de Recherche à l'Institut Pasteur d'Alger (HDR)
PU CHU Oran
PU Université d'El Tarf
EQUIPE : E13 - Bio cristallographie, biotechnologie et enzymologie structurale
RESPONSABLE : CHABRIERE Eric
THEMATIQUE : Etude structurale et enzymatique des protéines, Etude des protéines antivirale
DING, Bioingénierie d’une enzyme dextrement robuste pour décontaminer les agents
neurotoxiques de guerre et les insecticides, Bioingénierie d’une enzyme dextrement robuste pour
atténuer la virulence bactérienne. Etudes des nanons.
CHABRIERE
RICHEZ
Eric
Magali
PU
AI, AMU
EQUIPE : E14 - Molecular Parasitology and signaling
RESPONSABLE : FORESTIER Claire
THEMATIQUE : interactions hôte-pathogènes durant la leishmaniose visecérale.
EQUIPE: E15 – Genome-wide reconstruction of the evolution of the immune system in vertebrates
RESPONSABLE :ABI-RACHED Laurent
THEMATIQUE : Etude des bases génétiques de la maladie de Whipple, analyse génétique des
planaires, analyse génétique des DING et étude comparative des génomes de Borrelia
12/30
ACCUEIL MASTERS
Pathologie Humaine : Maladies transmissibles et pathologies tropicales - Aix-Marseille
EQUIPEMENTS MAJEURS
1/
2/
3/
4/
5/
6/
7/
8/
9/
Plateforme morphologique avec 2 microscopes électroniques
Plateforme de morphologie confocale
Plateforme IBISA de séquençage
Plateforme de protéomique - MALDI-TOF
Plateforme de transcriptome
Plateforme bio-informatique
Plateformes de surveillance sanitaire et démographique
Laboratoire de niveau de sécurité 3 (LNSB3)
Séquenceur de type 4.5.4
CONTRATS ANNÉE 2013
Responsable
Titre
Organisme
Nature
Année
D. RAOULT
JC LAGIER
« AIDS gut microbiota : Corrélation de la
biodiversité du microbiote digestif de
patients séropositifs pour le VIH ... »
Etude par approche métagénomique et
culturomique de la flore bactérienne de
l'infection du pied diabétique
Vaginoses bactériennes
AMU
ANRS
2013
AP-HM
PHRC
2013
AP-HM
STIC
2013
B LA SCOLA
F.BRETELLE
F. FENOLLAR
BREVETS ANNÉE 2013
13/54134
(06/05/2013)
13/57282
(24/07/2013)
13/59284
(26/09/2013)
Utilisation d'un composé
antioxydant
pour
la
culture
de
bactéries
sensibles à la tension en
oxygène
Méthode de détection de
la contamination par un
microbe d'un échantillon
par analyse de spectres de
masse
Méthode d'analyse
d'échantillon biologique
par soustraction des aires
totales d'un spectre de
masse d'un échantillon à
analyser et d'un spectre
de référence
RAOULT DRANCOURT
FMI/AMU/APHM/C
NRS
RAOULT CHABRIERE
CAMOIN FLAUDROPS
VIALATTE ISNARD
GALLIAN CHIARONI
FMI/AMU/APHM/C
NRS/EFS
RAOULT CHABRIERE
FLAUDROPS BREGEON
FMI/AMU/APHM/C
NRS
13/30
13/59894
(11/10/2013)
Procédé d'identification
de l'espèce animale
mammifère d'origine de la
viande ou gélatine d'un
échantillon à tester
RAOULT CHABRIERE
FLAUDROPS
FMI (cession)
PUBLICATIONS ANNÉE 2013
1: Mishra AK, Lagier JC, Pfleiderer A, Nguyen TT, Caputo A, Raoult D, Fournier PE. Non-contiguous
finished genome sequence and description of Holdemania massiliensis sp. nov. Stand Genomic Sci.
2013 Dec 15;9(2):395-409.
2: Roux V, Million M, Robert C, Magne A, Raoult D. Non-contiguous finished genome sequence and
description of Oceanobacillus massiliensis sp. nov. Stand Genomic Sci. 2013 Dec 15;9(2):370-84.
3: Roux V, Robert C, Raoult D. Non-contiguous finished genome sequence of Phocaeicola abscessus
type strain 7401987(T.). Stand Genomic Sci. 2013 Dec15;9(2):351-8.
4: Mishra AK, Edouard S, Dangui NP, Lagier JC, Caputo A, Blanc-Tailleur C, Ravaux I, Raoult D,
Fournier PE. Non-contiguous finished genome sequence and description of Nosocomiicoccus
massiliensis sp. nov. Stand Genomic Sci. 2013 Oct7;9(1):205-19.
5: Mediannikov O, El Karkouri K, Robert C, Fournier PE, Raoult D. Non-contiguous finished genome
sequence and description of Bartonella florenciae sp. nov. Stand Genomic Sci. 2013 Oct
10;9(1):185-96.
6: Hassani II, Robert C, Michelle C, Raoult D, Hacène H, Desnues C. Non-contiguous finished
genome sequence and description of Halopiger djelfamassiliensis sp. nov. Stand Genomic Sci. 2013
Oct 5;9(1):160-74. doi: 10.4056/sigs.4578289. eCollection 2013 Oct 16. PubMed PMID:
24501653; PubMed Central PMCID: PMC3910545.
7: Keita MB, Diene SM, Robert C, Raoult D, Fournier PE, Bittar F. Non-contiguous finished genome
sequence and description of Bacillus massiliogorillae sp. nov. Stand Genomic Sci. 2013 Oct
2;9(1):93-105. doi: 10.4056/sigs.4388124. eCollection 2013 Oct 16. PubMed PMID: 24501648;
PubMed Central PMCID: PMC3910557.
8: Lo CI, Mishra AK, Padhmanabhan R, Samb B, Sow AG, Robert C, Couderc C, Faye N, Raoult D,
Fournier PE, Fenollar F. Non-contiguous finished genome sequence and description of Clostridium
dakarense sp. nov. Stand Genomic Sci. 2013 Sep 30;9(1):14-27. doi: 10.4056/sigs.4097825.
eCollection 2013 Oct 16. PubMed PMID: 24501642; PubMed Central PMCID: PMC3910555.
9: Elbir H, Robert C, Nguyen TT, Gimenez G, El Sanousi SM, Flock JI, Raoult D, Drancourt M.
Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence. Stand Genomic Sci.
2013 Oct 15;9(1):1-13. doi: 10.4056/sigs.3748294. eCollection 2013 Oct 16. PubMed PMID:
10: Pagnier I, Croce O, Robert C, Raoult D, La Scola B. Non-contiguous finished genome sequence
and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium. Stand
Genomic Sci. 2013 Aug 10;8(3):548-60. doi: 10.4056/sigs.4177252.
eCollection 2013 Jul 30. PubMed PMID: 24501638; PubMed Central PMCID: PMC3910703.
11: Padmanabhan R, Lagier JC, Dangui NP, Michelle C, Couderc C, Raoult D, Fournier PE. Noncontiguous finished genome sequence and description of Megasphaera massiliensis sp. nov. Stand
Genomic Sci. 2013 Aug 7;8(3):525-38. doi: 10.4056/sigs.4077819. eCollection 2013 Jul 30.
PubMed PMID: 24501636; PubMed Central PMCID: PMC3910696.
12: Hugon P, Ramasamy D, Robert C, Couderc C, Raoult D, Fournier PE. Non-contiguous finished
genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of
the family Clostridiales Incertae Sedis XI. Stand Genomic Sci. 2013 Jul 30;8(3):500-15. doi:
10.4056/sigs.4047997. eCollection 2013 Jul 30. PubMed PMID: 24501634; PubMed Central PMCID:
PMC3910704.
14/30
13: Mishra AK, Pfleiderer A, Lagier JC, Robert C, Raoult D, Fournier PE. Non-contiguous finished
genome sequence and description of Bacillus massilioanorexius sp. nov. Stand Genomic Sci. 2013
Jul 30;8(3):465-79. doi: 10.4056/sigs.4087826. eCollection 2013 Jul 30. PubMed PMID:
14: Cohen L, Ranque S, Raoult D. Saccharomyces cerevisiae boulardii transient fungemia after
intravenous
self-inoculation.
Med
Mycol
Case
Rep.
2013
Feb
14;2:63-4.
doi:
10.1016/j.mmcr.2013.02.003. eCollection 2013 Feb 14. PubMed PMID: 24432219; PubMed Central
PMCID: PMC3885949.
15: El Kaoutari A, Armougom F, Leroy
Development and validation of a microarray
human
gut
microbiome.
PLoS
10.1371/journal.pone.0084033. eCollection
PMCID: PMC3877134.
Q, Vialettes B, Million M, Raoult D, Henrissat B.
for the investigation of the CAZymes encoded by the
One.
2013
Dec
31;8(12):e84033.
doi:
2013. PubMed PMID: 24391873; PubMed Central
16: De la Cruz MA, Zhao W, Farenc C, Gimenez G, Raoult D, Cambillau C, Gorvel JP, Méresse S. A
toxin-antitoxin
module
of
Salmonella
promotes
virulence
in
mice.
PLoS
Pathog.
2013;9(12):e1003827. doi: 10.1371/journal.ppat.1003827. Epub 2013 Dec 19. PubMed PMID:
17: Mediannikov O, Diatta G, Kasongo K, Raoult D. Identification of Bartonellae in the soft tick
species Ornithodoros sonrai in Senegal. Vector Borne Zoonotic Dis. 2014 Jan;14(1):26-32. doi:
10.1089/vbz.2013.1326. Epub 2013 Dec 20. PubMed PMID: 24359424; PubMed Central PMCID:
PMC3880920.
18: Kumsa B, Parola P, Raoult D, Socolovschi C. Bartonella melophagi in Melophagus ovinus (sheep
ked) collected from sheep in northern Oromia, Ethiopia. Comp Immunol Microbiol Infect Dis. 2014
Jan;37(1):69-76. doi: 10.1016/j.cimid.2013.11.001. Epub 2013 Nov 9. PubMed PMID: 24326024.
19: Bouricha M, Samad MA, Levy PY, Raoult D, Drancourt M. Point-of-care syndrome-based, rapid
diagnosis of infections on commercial ships. J Travel Med.
2014 Jan-Feb;21(1):12-6. doi:
10.1111/jtm.12090. Epub 2013 Dec 3. PubMed PMID:
24298957.
20: Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P. Complete genome
sequence of Courdo11 virus, a member of the family Mimiviridae. Virus Genes. 2014
Apr;48(2):218-23. doi: 10.1007/s11262-013-1016-x. Epub 2013 Dec
1. PubMed PMID: 24293219.
21: Le Blay P, Rakotonirainy H, Lagier JC, Raoult D, Puechal X, Pers YM. A severe Whipple disease
with an immune reconstitution inflammatory syndrome: an additional case of thalidomide
efficiency. Joint Bone Spine. 2014 May; 81(3):260-2.
doi: 10.1016/j.jbspin.2013.10.007. Epub 2013 Nov 28. PubMed PMID: 24289960.
22: Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B. First isolation of a giant virus
from wild Hirudo medicinalis leech: Mimiviridae isolation in Hirudo medicinalis. Viruses. 2013 Nov
27;5(12):2920-30. doi: 10.3390/v5122920. PubMed PMID: 24287596; PubMed Central PMCID:
PMC3967153.
23: Sentausa E, Abdad MY, Robert C, Stenos J, Raoult D, Fournier PE. Genome Sequence of
Rickettsia gravesii, Isolated from Western Australian Ticks. Genome Announc. 2013 Nov 27;1(6).
pii: e00975-13. doi: 10.1128/genomeA.00975-13. PubMed PMID: 24285646; PubMed Central
PMCID: PMC3869331.
24: Abat C, Chaudet H, Raoult D, Colson P. Increasing trend of invasive group B streptococcal
infections, Marseille, France. Clin Infect Dis. 2014 Mar;58(5):750-1. doi: 10.1093/cid/cit777. Epub
2013 Nov 26. PubMed PMID: 24280092.
25: Hernández-López A, Chabrol O, Royer-Carenzi M, Merhej V, Pontarotti P, Raoult D. To tree or
not to tree? Genome-wide quantification of recombination and reticulate evolution during the
diversification of strict intracellular bacteria. Genome Biol Evol. 2013;5(12):2305-17. doi:
10.1093/gbe/evt178. PubMed PMID:24259310; PubMed Central PMCID: PMC3879967.
15/30
26: Raoult D, Charrel R, Gautret P, Parola P. From the Hajj: it's the flu, idiot. Clin Microbiol Infect.
2014 Jan;20(1):O1. doi: 10.1111/1469-0691.12448. Epub 2013 Nov 26. PubMed PMID:
24256052.
27: Lagier JC, Dubourg G, Cassir N, Fournier PE, Colson P, Richet H, Brouqui P,
Raoult D. Clostridium difficile 027 emerging outbreak in Marseille, France.
Infect Control Hosp Epidemiol. 2013 Dec;34(12):1339-41. doi: 10.1086/673995.
PubMed PMID: 24225631.
28: Fenollar F, Célard M, Lagier JC, Lepidi H, Fournier PE, Raoult D. Tropheryma whipplei
endocarditis. Emerg Infect Dis. 2013 Nov;19(11):1721-30. doi: 10.3201/eid1911.121356. Review.
29: Boutellis A, Drali R, Rivera MA, Mumcuoglu KY, Raoult D. Evidence of sympatry of clade a and
clade B head lice in a pre-Columbian Chilean mummy from Camarones. PLoS One. 2013 Oct
30;8(10):e76818. doi: 10.1371/journal.pone.0076818. eCollection 2013. PubMed PMID:
30: Padmanabhan R, Mishra AK, Raoult D, Fournier PE. Genomics and metagenomics in medical
microbiology. J Microbiol Methods. 2013 Dec;95(3):415-24.
doi: 10.1016/j.mimet.2013.10.006. Epub 2013 Nov 5. Review. PubMed PMID: 24200711.
31: Million M, Raoult D. Reply to Kampschreur et al. Clin Infect Dis. 2014 Feb;58(3):447-8. doi:
10.1093/cid/cit720. Epub 2013 Nov 5. PubMed PMID: 24192387.
32: Mediannikov O, Socolovschi C, Edouard S, Fenollar F, Mouffok N, Bassene H, Diatta G, Tall A,
Niangaly H, Doumbo O, Lekana-Douki JB, Znazen A, Sarih M, Ratmanov P, Richet H, Ndiath MO,
Sokhna C, Parola P, Raoult D. Common epidemiology of Rickettsia felis infection and malaria,
Africa. Emerg Infect Dis. 2013 Nov;19(11):1775-83. doi: 10.3201/eid1911.130361. PubMed PMID:
33: Edouard S, Million M, Royer G, Giorgi R, Grisoli D, Raoult D. Reduction in incidence of Q fever
endocarditis: 27 years of experience of a national reference center. J Infect. 2014 Feb;68(2):1418. doi: 10.1016/j.jinf.2013.10.010. Epub 2013 Oct 29. PubMed PMID: 24183890.
34: Popgeorgiev N, Colson P, Thuret I, Chiarioni J, Gallian P, Raoult D, Desnues C. Marseillevirus
prevalence in multitransfused patients suggests blood transmission. J Clin Virol. 2013
Dec;58(4):722-5. doi: 10.1016/j.jcv.2013.10.001. Epub 2013 Oct 15. PubMed PMID: 24183312.
35: Veracx A, Boutellis A, Raoult D. Genetic recombination events between sympatric Clade A and
Clade C lice in Africa. J Med Entomol. 2013 Sep;50(5):1165-8. PubMed PMID: 24180123.
36: Angelakis E, Mediannikov O, Stein A, Bassene H, Sokhna C, Raoult D. Throat swab samples for
diagnosis of Q fever. Am J Trop Med Hyg. 2014 Jan;90(1):147-8. doi: 10.4269/ajtmh.13-0490.
Epub 2013 Oct 28. PubMed PMID: 24166041; PubMed
Central PMCID: PMC3886411.
37: Slimani M, Pagnier I, Boughalmi M, Raoult D, La Scola B. Alcohol disinfection procedure for
isolating giant viruses from contaminated samples. Intervirology. 2013;56(6):434-40. doi:
10.1159/000354566. Epub 2013 Oct 17. PubMed PMID: 24157890.
38: Saadi H, Reteno DG, Colson P, Aherfi S, Minodier P, Pagnier I, Raoult D, La Scola B. Shan
virus: a new mimivirus isolated from the stool of a Tunisian patient with pneumonia. Intervirology.
2013;56(6):424-9. doi: 10.1159/000354564. Epub 2013 Oct 17. PubMed PMID: 24157888.
39: Ngounga T, Pagnier I, Reteno DG, Raoult D, La Scola B, Colson P. Real-time PCR systems
targeting giant viruses of amoebae and their virophages. Intervirology. 2013;56(6):413-23. doi:
10.1159/000354563. Epub 2013 Oct 17.
40: Popgeorgiev N, Temmam S, Raoult D, Desnues C. Describing the silent human virome with an
emphasis on giant viruses. Intervirology. 2013;56(6):395-412. doi: 10.1159/000354561. Epub
2013 Oct 17. Review. PubMed PMID: 24157886.
16/30
41: Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B. First isolation of a
Marseillevirus in the Diptera Syrphidae Eristalis tenax. Intervirology. 2013;56(6):386-94. doi:
42: Colson P, La Scola B, Raoult D. Giant viruses of amoebae as potential human pathogens.
Intervirology. 2013;56(6):376-85. doi: 10.1159/000354558. Epub 2013 Oct 17. Review. PubMed
PMID: 24157884.
43: Colson P, Fournous G, Diene SM, Raoult D. Codon usage, amino acid usage, transfer RNA and
amino-acyl-tRNA
synthetases
in
Mimiviruses.
Intervirology.
2013;56(6):364-75.
doi:
44: Pagnier I, Reteno DG, Saadi H, Boughalmi M, Gaia M, Slimani M, Ngounga T, Bekliz M, Colson
P, Raoult D, La Scola B. A decade of improvements in Mimiviridae and Marseilleviridae isolation
from amoeba. Intervirology. 2013;56(6):354-63. doi: 10.1159/000354556. Epub 2013 Oct 17.
45: Raoult D. A need to discover the world of giant viruses. Intervirology. 2013;56(6):347-8. doi:
46: Compain C, Sacre K, Puéchal X, Klein I, Vital-Durand D, Houeto JL, De
Broucker T, Raoult D, Papo T. Central nervous system involvement in Whipple
disease: clinical study of 18 patients and long-term follow-up. Medicine
(Baltimore). 2013 Nov;92(6):324-30. doi: 10.1097/MD.0000000000000010. PubMed
PMID: 24145700.
47: Thuny F, Lass O, Saby L, Tessonnier L, Cammilleri S, Casalta JP, Mundler O, Raoult D, Habib G.
Reply: positron emission tomography/computed tomography for diagnosis of prosthetic valve
endocarditis. J Am Coll Cardiol. 2014 Jan 21;63(2):187-9. doi: 10.1016/j.jacc.2013.09.034. Epub
2013 Oct 16. PubMed PMID: 24140669.
48: Levy PY, Fournier PE, Fenollar F, Raoult D. Systematic PCR detection in culture-negative
osteoarticular
infections.
Am
J
Med.
2013
Dec;126(12):1143.e25-33.
doi:
10.1016/j.amjmed.2013.04.027. Epub 2013 Oct 14. PubMed PMID: 24135511.
49: Stein A, Doutchi M, Fenollar F, Raoult D. Tropheryma whipplei pneumonia in a patient with
HIV-2 infection. Am J Respir Crit Care Med. 2013 Oct 15;188(8):1036-7. doi:
10.1164/rccm.201304-0692LE. PubMed PMID: 24127807.
50: Muhammed Ameen S, Rolain JM, Le Poullain MN, Roux V, Raoult D, Drancourt M. Serum
concentration of co-trimoxazole during a high-dosage regimen. J Antimicrob Chemother. 2014
Mar;69(3):757-60. doi: 10.1093/jac/dkt400. Epub 2013 Oct 11.
51: Raoult D. Impact factors of scientific journals: the new season. Clin Microbiol Infect. 2013
Nov;19(11):989-90. doi: 10.1111/1469-0691.12353. PubMed
PMID: 24118619.
52: Angelakis E, Oddoze C, Raoult D. Vitamin D and prolonged treatment with photosensitivityassociated antibiotics. Antimicrob Agents Chemother. 2013 Dec;57(12):6409-10. doi:
10.1128/AAC.01969-13. Epub 2013 Oct 7. PubMed PMID:
53: Parola P, Paddock CD, Socolovschi C, Labruna MB, Mediannikov O, Kernif T, Abdad MY, Stenos
J, Bitam I, Fournier PE, Raoult D. Update on tick-borne rickettsioses around the world: a
geographic approach. Clin Microbiol Rev. 2013 Oct;26(4):657-702. doi: 10.1128/CMR.00032-13.
Review. PubMed PMID: 24092850; PubMed Central PMCID: PMC3811236.
54: Brouqui P, Aubry C, Million M, Drancourt M, Raoult D. Totally resistant tuberculosis: will
antileprosy drugs be helpful? Int J Antimicrob Agents. 2013 Dec;42(6):584-5. doi:
10.1016/j.ijantimicag.2013.08.004. Epub 2013 Sep 7. PubMed PMID: 24091129.
17/30
55: Foissac M, Socolovschi C, Raoult D. [Update on SENLAT syndrome: scalp eschar
and neck lymph adenopathy after a tick bite]. Ann Dermatol Venereol. 2013
Oct;140(10):598-609. doi: 10.1016/j.annder.2013.07.014. Epub 2013 Aug 23. Review.
French. PubMed PMID: 24090889.
56: Popgeorgiev N, Michel G, Lepidi H, Raoult D, Desnues C. Marseillevirus adenitis in an 11month-old child. J Clin Microbiol. 2013 Dec;51(12):4102-5. doi: 10.1128/JCM.01918-13. Epub
2013 Oct 2. PubMed PMID: 24088856; PubMed Central PMCID: PMC3838047.
57: Lagier JC, Fenollar F, Koric L, Guedj E, Ceccaldi M, Raoult D. [Weight loss, dementia and
ataxia susceptible to doxycycline: a likely new case report caused by T. whipplei]. Rev Med Interne.
2013 Oct;34(10):641-4. doi: 10.1016/j.revmed.2012.12.006. Epub 2013 Sep 26. French. PubMed
PMID: 24075626.
58: Angelakis E, Merhej V, Raoult D. Related actions of probiotics and antibiotics on gut microbiota
and weight modification. Lancet Infect Dis. 2013 Oct;13(10):889-99. doi: 10.1016/S14733099(13)70179-8. Review. PubMed PMID: 24070562.
59: Delaunay V, Douillot L, Diallo A, Dione D, Trape JF, Medianikov O, Raoult D, Sokhna C. Profile:
the Niakhar Health and Demographic Surveillance System. Int J Epidemiol. 2013 Aug;42(4):100211. doi: 10.1093/ije/dyt100. PubMed PMID: 24062286; PubMed Central PMCID: PMC3781002.
60: Edouard S, Raoult D. Use of the plaque assay for testing the antibiotic susceptibility of
intracellular bacteria. Future Microbiol. 2013 Oct;8(10):1301-16. doi: 10.2217/fmb.13.98. Review.
61: Xiong H, Barker SC, Burger TD, Raoult D, Shao R. Heteroplasmy in the mitochondrial genomes
of human lice and ticks revealed by high throughput sequencing. PLoS One. 2013 Sep
13;8(9):e73329. doi: 10.1371/journal.pone.0073329. eCollection 2013. PubMed PMID: 24058467;
62: Foissac M, Socolovschi C, Raoult D. [Lymphangitis-associated rickettsiosis caused by Rickettsia
sibirica mongolitimonae]. Ann Dermatol Venereol. 2013 Aug-Sep;140(8-9):521-7. doi:
10.1016/j.annder.2013.04.096. Epub 2013 Jun 3. Review. French. PubMed PMID: 24034636.
63: Fournier PE, Drancourt M, Colson P, Rolain JM, La Scola B, Raoult D. Modern clinical
microbiology: new challenges and solutions. Nat Rev Microbiol. 2013 Aug;11(8):574-85. Review.
64: Hugon P, Ramasamy D, Lagier JC, Rivet R, Couderc C, Raoult D, Fournier PE. Non contiguousfinished genome sequence and description of Alistipes obesi sp. nov. Stand Genomic Sci. 2013 Feb
25;7(3):427-39. doi: 10.4056/sigs.3336746. eCollection 2013. PubMed PMID: 24019990; PubMed
65: Lagier JC, El Karkouri K, Mishra AK, Robert C, Raoult D, Fournier PE. Non contiguous-finished
genome sequence and description of Enterobacter massiliensis sp. nov. Stand Genomic Sci. 2013
Feb 22;7(3):399-412. doi: 10.4056/sigs.3396830. eCollection 2013. PubMed PMID: 24019988;
66: Mishra AK, Lagier JC, Nguyen TT, Raoult D, Fournier PE. Non contiguous-finished genome
sequence and description of Peptoniphilus senegalensis sp. nov. Stand Genomic Sci. 2013 Feb
67: Mishra AK, Hugon P, Lagier JC, Nguyen TT, Robert C, Couderc C, Raoult D, Fournier PE. Non
contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov. Stand
Genomic Sci. 2013 Feb 25;7(3):357-69. doi: 10.4056/sigs.3276687. eCollection 2013. PubMed
PMID: 24019985; PubMed Central
PMCID: PMC3764929.
68: Lagier JC, Elkarkouri K, Rivet R, Couderc C, Raoult D, Fournier PE. Non contiguous-finished
genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov. Stand
Genomic Sci. 2013 Feb 25;7(3):343-56. doi: 10.4056/sigs.3246665. eCollection 2013. PubMed
PMID: 24019984; PubMed Central PMCID: PMC3764928.
18/30
69: Angelakis E, Socolovschi C, Raoult D. Bartonella quintana in Cimex hemipterus, Rwanda. Am J
Trop Med Hyg. 2013 Nov;89(5):986-7. doi: 10.4269/ajtmh.13-0182. Epub 2013 Sep 9. PubMed
PMCID: PMC3820348.
70: Million M, Thuny F, Angelakis E, Casalta JP, Giorgi R, Habib G, Raoult D. Lactobacillus reuteri
and Escherichia coli in the human gut microbiota may predict weight gain associated with
vancomycin treatment. Nutr Diabetes. 2013 Sep 9;3:e87. doi: 10.1038/nutd.2013.28. PubMed
PMID: 24018615; PubMed Central PMCID:
PMC3789131.
71: Levy PY, Ollivier M, Drancourt M, Raoult D, Argenson JN. Relation between nasal carriage of
Staphylococcus aureus and surgical site infection in orthopedic surgery: the role of nasal
contamination. A systematic literature review and meta-analysis. Orthop Traumatol Surg Res. 2013
Oct;99(6):645-51. doi: 10.1016/j.otsr.2013.03.030. Epub 2013 Aug 29. Review. PubMed PMID:
23992764.
72: Ramasamy D, Lagier JC, Nguyen TT, Raoult D,
sequence and description of Dielma fastidiosa gen.
Erysipelotrichaceae. Stand Genomic Sci. 2013 Jun
eCollection 2013. PubMed PMID: 23991263; PubMed
Fournier PE. Non contiguous-finished genome
nov., sp. nov., a new member of the Family
13;8(2):336-51. doi: 10.4056/sigs.3567059.
73: Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PE. Genome sequence and description of
Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae. Stand
Genomic Sci. 2013 Jun 13;8(2):318-35. doi: 10.4056/sigs.3476977. eCollection 2013. PubMed
PMCID: PMC3746429.
74: Sassi M, Robert C, Raoult D, Drancourt M. Non-contiguous genome sequence of Mycobacterium
simiae strain DSM 44165(T.). Stand Genomic Sci. 2013 Jun 7;8(2):306-17. doi:
10.4056/sigs.3707349. eCollection 2013. PubMed PMID: 23991261; PubMed Central PMCID:
PMC3746425.
75: Mishra AK, Hugon P, Lagier JC, Nguyen TT, Couderc C, Raoult D, Fournier PE. Non contiguousfinished genome sequence and description of Enorma massiliensis gen. nov., sp. nov., a new
member of the Family Coriobacteriaceae. Stand Genomic Sci. 2013 Jun 6;8(2):290-305. doi:
10.4056/sigs.3426906. eCollection 2013. PubMed PMID: 23991260; PubMed Central PMCID:
PMC3746427.
76: Mediannikov O, El Karkouri K, Diatta G, Robert C, Fournier PE, Raoult D. Non-contiguous
finished genome sequence and description of Bartonella senegalensis sp. nov. Stand Genomic Sci.
2013 Jun 6;8(2):279-89. doi: 10.4056/sigs.3807472. eCollection 2013. PubMed PMID: 23991259;
77: Ramasamy D, Lagier JC, Gorlas A, Raoult D, Fournier PE. Non contiguous-finished genome
sequence and description of Bacillus massiliosenegalensis sp. nov. Stand Genomic Sci. 2013 Jun
78: Yssouf A, Socolovschi C, Flaudrops C, Ndiath MO, Sougoufara S, Dehecq JS, Lacour G,
Berenger JM, Sokhna CS, Raoult D, Parola P. Matrix-assisted laser desorption ionization--time of
flight mass spectrometry: an emerging tool for the rapid identification of mosquito vectors. PLoS
One. 2013 Aug 15;8(8):e72380. doi: 10.1371/journal.pone.0072380. eCollection 2013. PubMed
79: Hugon P, Mishra AK, Lagier JC, Nguyen TT, Couderc C, Raoult D, Fournier PE. Non-contiguous
finished genome sequence and description of Brevibacillus massiliensis sp. nov. Stand Genomic Sci.
2013 Apr 15;8(1):1-14. doi: 10.4056/sigs.3466975. eCollection 2013 Apr 15. PubMed PMID:
23961307; PubMed
80: Sassi M, Robert C, Raoult D, Drancourt M. Noncontiguous Genome Sequence of Mycobacterium
septicum Strain DSM 44393T. Genome Announc. 2013 Aug 15;1(4). pii:
e00574-13. doi:
10.1128/genomeA.00574-13. PubMed PMID: 23950116; PubMed Central
PMCID: PMC3744672.
19/30
81: Lagier JC, Fenollar F, Lepidi H, Giorgi R, Million M, Raoult D. Treatment of classic Whipple's
disease: from in vitro results to clinical outcome. J Antimicrob Chemother. 2014 Jan;69(1):219-27.
doi: 10.1093/jac/dkt310. Epub 2013 Aug 14. PubMed PMID: 23946319.
82: Edouard S, Subramanian G, Lefevre B, Dos Santos A, Pouedras P, Poinsignon Y, Mediannikov
O, Raoult D. Co-infection with Arsenophonus nasoniae and Orientia tsutsugamushi in a traveler.
Vector Borne Zoonotic Dis. 2013 Aug;13(8):565-71. doi: 10.1089/vbz.2012.1083. Epub 2013 May
13. PubMed PMID: 23930974.
83: Elbir H, Raoult D, Drancourt M. Relapsing fever borreliae in Africa. Am J Trop Med Hyg. 2013
Aug;89(2):288-92. doi: 10.4269/ajtmh.12-0691. Review. PubMed PMID: 23926141; PubMed
84: Aherfi S, Pagnier I, Fournous G, Raoult D, La Scola B, Colson P. Complete genome sequence of
Cannes 8 virus, a new member of the proposed family "Marseilleviridae". Virus Genes. 2013
Dec;47(3):550-5. doi: 10.1007/s11262-013-0965-4. Epub 2013 Aug 4. PubMed PMID: 23912978.
85: Hubert S, Thuny F, Resseguier N, Giorgi R, Tribouilloy C, Le Dolley Y, Casalta JP, Riberi A,
Chevalier F, Rusinaru D, Malaquin D, Remadi JP, Ammar AB,
Avierinos JF, Collart F, Raoult D, Habib G. Prediction of symptomatic embolism in infective
endocarditis: construction and validation of a risk calculator in a multicenter cohort. J Am Coll
Cardiol. 2013 Oct 8;62(15):1384-92. doi: 10.1016/j.jacc.2013.07.029. Epub 2013 Aug 7. PubMed
PMID: 23906859.
86: Richet H, Carrieri P, Loffeier V, Cassir N, La Scola B, Obadia Y, Raoult D. Health-careassociated bloodstream infections in France. Lancet Infect Dis. 2013
Aug;13(8):656. doi:
10.1016/S1473-3099(13)70189-0. PubMed PMID: 23886333.
87: Drancourt M, Gaydos CA, Summersgill JT, Raoult D. Point-of-care testing for communityacquired pneumonia. Lancet Infect Dis. 2013 Aug;13(8):647-9. doi: 10.1016/S14733099(13)70165-8. PubMed PMID: 23886323.
88: Hugon P, Lagier JC, Robert C, Lepolard C, Papazian L, Musso D, Vialettes B, Raoult D.
Molecular studies neglect apparently gram-negative populations in the human gut microbiota. J Clin
Microbiol. 2013 Oct;51(10):3286-93. doi: 10.1128/JCM.00473-13. Epub 2013 Jul 24. PubMed
PMCID: PMC3811629.
89: Raoult D, Foti B, Aboudharam G. Historical and geographical parallelism between the incidence
of dental caries, Streptococcus mutans and sugar intake. Eur J Epidemiol. 2013 Aug;28(8):709-10.
doi: 10.1007/s10654-013-9826-7. Epub 2013 Jul 24. PubMed PMID: 23880892; PubMed Central
PMCID: PMC3778904.
90: Ouchenane Z, Agabou A, Smati F, Rolain JM, Raoult D. Staphylococcal cassette chromosome
mec characterization of methicillin-resistant Staphylococcus aureus strains isolated at the military
hospital
of
Constantine/Algeria.
Pathol
Biol
(Paris).
2013
Dec;61(6):280-1.
doi:
10.1016/j.patbio.2013.05.006. Epub 2013 Jul 20. PubMed PMID: 23880229.
91: Neuberger A, Paul M, Nizar A, Raoult D. Modelling in infectious diseases: between haphazard
and hazard. Clin Microbiol Infect. 2013 Nov;19(11):993-8. doi: 10.1111/1469-0691.12309. Epub
2013 Jul 23. Review. PubMed PMID: 23879334.
92: Raoult D. TRUC or the need for a new microbial classification. Intervirology. 2013;56(6):34953. doi: 10.1159/000354269. Epub 2013 Jul 18. Review. PubMed PMID:
23867259.
93: Lalani T, Chu VH, Park LP, Cecchi E, Corey GR, Durante-Mangoni E, Fowler VG Jr, Gordon D,
Grossi P, Hannan M, Hoen B, Muñoz P, Rizk H, Kanj SS, Selton-Suty C, Sexton DJ, Spelman D,
Ravasio V, Tripodi MF, Wang A; International Collaboration on Endocarditis–Prospective Cohort
Study Investigators. In-hospital and 1-year mortality in patients undergoing early surgery for
prosthetic valve endocarditis. JAMA Intern Med. 2013 Sep 9;173(16):1495-504. doi:
10.1001/jamainternmed.2013.8203. Erratum in: JAMA Intern Med. 2013 Oct 28;173(19):1846.
20/30
94: Edouard S, Million M, Lepidi H, Rolain JM, Fournier PE, La Scola B, Grisoli D, Raoult D.
Persistence of DNA in a cured patient and positive culture in cases with low antibody levels bring
into question diagnosis of Q fever endocarditis. J Clin Microbiol. 2013 Sep;51(9):3012-7. doi:
10.1128/JCM.00812-13. Epub 2013 Jul 12. PubMed PMID: 23850956; PubMed Central PMCID:
PMC3754656.
95: Hraiech S, Roch A, Lepidi H, Atieh T, Audoly G, Rolain JM, Raoult D, Brunel
JM, Papazian L, Brégeon F. Impaired virulence and fitness of a colistin-resistant clinical isolate of
Acinetobacter baumannii in a rat model of pneumonia. Antimicrob Agents Chemother. 2013
Oct;57(10):5120-1. doi: 10.1128/AAC.00700-13. Epub 2013 Jul 8. PubMed PMID: 23836181;
96: Popgeorgiev N, Boyer M, Fancello L, Monteil S, Robert C, Rivet R, Nappez C, Azza S, Chiaroni J,
Raoult D, Desnues C. Marseillevirus-like virus recovered from blood donated by asymptomatic
humans. J Infect Dis. 2013 Oct 1;208(7):1042-50. doi: 10.1093/infdis/jit292. Epub 2013 Jul 2.
97: Merhej V, Georgiades K, Raoult D. Postgenomic analysis of bacterial pathogens repertoire
reveals genome reduction rather than virulence factors. Brief Funct Genomics. 2013 Jul;12(4):291304. doi: 10.1093/bfgp/elt015. Epub 2013 Jun 29. PubMed PMID: 23814139.
98: Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van
Etten JL, Koonin EV, La Scola B, Raoult D. "Megavirales", a proposed new order for eukaryotic
nucleocytoplasmic large DNA viruses. Arch Virol. 2013 Dec;158(12):2517-21. doi:
10.1007/s00705-013-1768-6. Epub 2013 Jun
29. PubMed PMID: 23812617; PubMed Central PMCID: PMC4066373.
99: Mehraj V, Textoris J, Ben Amara A, Ghigo E, Raoult D, Capo C, Mege JL.
Monocyte responses in the context of Q fever: from a static polarized model to a kinetic model of
activation. J Infect Dis. 2013 Sep;208(6):942-51. doi: 10.1093/infdis/jit266. Epub 2013 Jun 24.
100: Casalta JP, Zaratzian C, Hubert S, Thuny F, Gouriet F, Habib G, Grisoli D, Deharo JC, Raoult
D.
Treatment
of
Staphylococcus
aureus
endocarditis
with
high
doses
of
trimethoprim/sulfamethoxazole and clindamycin-Preliminary report. Int J Antimicrob Agents. 2013
Aug;42(2):190-1. doi: 10.1016/j.ijantimicag.2013.05.002.
Epub 2013 Jun 21. PubMed PMID: 23796892.
101: Million M, Walter G, Thuny F, Habib G, Raoult D. Evolution from acute Q fever to endocarditis
is associated with underlying valvulopathy and age and can be prevented by prolonged antibiotic
treatment. Clin Infect Dis. 2013 Sep;57(6):836-44. doi: 10.1093/cid/cit419. Epub 2013 Jun 20.
102: Mahamat A, Edouard S, Demar M, Abboud P, Patrice JY, La Scola B, Okandze A,
Djossou F, Raoult D. Unique clone of Coxiella burnetii causing severe Q fever, French Guiana.
Emerg Infect Dis. 2013 Jul;19(7):1102-4. doi: 10.3201/eid1907.130044. PubMed PMID:
103: Donatin E, Buffet S, Leroy Q, Raoult D, Drancourt M. A DNA microarray for the versatile
diagnosis of infectious diarrhea. APMIS. 2013 Jul;121(7):634-42. doi: 10.1111/apm.12081. Epub
2013 Jun 12. PubMed PMID: 23758523.
104: Million M, Raoult D. The pathogenesis of the antiphospholipid syndrome. N Engl J Med. 2013
Jun 13;368(24):2335. doi: 10.1056/NEJMc1304515#SA2. PubMed PMID: 23758255.
105: Suárez C, Welsch S, Chlanda P, Hagen W, Hoppe S, Kolovou A, Pagnier I, Raoult D, Krijnse
Locker J. Open membranes are the precursors for assembly of large DNA viruses. Cell Microbiol.
2013 Nov;15(11):1883-95. doi: 10.1111/cmi.12156. Epub 2013 Jul 5. PubMed PMID: 23751082;
106: Piarroux R, Abedi AA, Shako JC, Kebela B, Karhemere S, Diatta G, Davoust B, Raoult D,
Drancourt M. Plague epidemics and lice, Democratic Republic of the Congo. Emerg Infect Dis. 2013
Mar;19(3):505-6. PubMed PMID: 23750356; PubMed Central PMCID: PMC3647677.
21/30
107: Jiyipong T, Morand S, Jittapalapong S, Raoult D, Rolain JM. Bordetella hinzii in rodents,
Southeast Asia. Emerg Infect Dis. 2013 Mar;19(3):502-3. PubMed PMID: 23750354; PubMed
108: El Kaoutari A, Armougom F, Gordon JI, Raoult D, Henrissat B. The abundance and variety of
carbohydrate-active enzymes in the human gut microbiota. Nat Rev Microbiol. 2013 Jul;11(7):497504. doi: 10.1038/nrmicro3050. Epub 2013 Jun 10. PubMed PMID: 23748339.
109: Thuny F, Saby L, Tessonier L, Cammilleri S, Raoult D, Habib G. Reply: positron emission
tomography/computed tomography for diagnosis of prosthetic valve endocarditis. J Am Coll
Cardiol. 2013 Aug 27;62(9):861-2. doi: 10.1016/j.jacc.2013.05.038. Epub 2013 Jun 7. PubMed
PMID: 23747782.
110: Atieh T, Audoly G, Hraiech S, Lepidi H, Roch A, Rolain JM, Raoult D, Papazian L, Brégeon F.
Evaluation of the diagnostic value of fluorescent in situ hybridization in a rat model of bacterial
pneumonia.
Diagn
Microbiol
Infect
Dis.
2013
Aug;76(4):425-31.
doi:
10.1016/j.diagmicrobio.2013.04.028. Epub 2013 Jun 7. PubMed PMID: 23747031.
111: Singh S, Kowalczewska M, Edouard S, Eldin C, Perreal C, Weber P, Azza S,
Raoult D. Cell extract-containing medium for culture of intracellular fastidious bacteria. J Clin
Microbiol. 2013 Aug;51(8):2599-607. doi: 10.1128/JCM.00719-13. Epub 2013 Jun 5. PubMed
112: Raoult D. Pig-related infections. Clin Microbiol Infect. 2013 Jul;19(7):585.
doi: 10.1111/1469-0691.12258. PubMed PMID: 23738655.
113: Pfleiderer A, Lagier JC, Armougom F, Robert C, Vialettes B, Raoult D.
Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample. Eur J
Clin Microbiol Infect Dis. 2013 Nov;32(11):1471-81. doi: 10.1007/s10096-013-1900-2. Epub 2013
Jun 2. PubMed PMID: 23728738.
114: Raoult D. Digestive microbiota and its influence on health: facts and myths.
Microb Pathog. 2013 Aug-Sep;61-62:A1. doi: 10.1016/j.micpath.2013.05.008. Epub
2013 May 27. PubMed PMID: 23722049.
115: Saadi H, Pagnier I, Colson P, Cherif JK, Beji M, Boughalmi M, Azza S, Armstrong N, Robert C,
Fournous G, La Scola B, Raoult D. First isolation of Mimivirus in a patient with pneumonia. Clin
Infect Dis. 2013 Aug;57(4):e127-34. doi: 10.1093/cid/cit354. Epub 2013 May 24. PubMed PMID:
23709652.
116: Yutin N, Raoult D, Koonin EV. Virophages, polintons, and transpovirons: a complex
evolutionary network of diverse selfish genetic elements with different reproduction strategies.
Virol J. 2013 May 23;10:158. doi: 10.1186/1743-422X-10-158. PubMed PMID: 23701946; PubMed
117: Chambers ST, Murdoch D, Morris A, Holland D, Pappas P, Almela M, Fernández-Hidalgo N,
Almirante B, Bouza E, Forno D, del Rio A, Hannan MM, Harkness J, Kanafani ZA, Lalani T, Lang S,
Raymond N, Read K, Vinogradova T, Woods CW, Wray D, Corey GR, Chu VH; International
Collaboration on Endocarditis Prospective Cohort Study Investigators. HACEK infective
endocarditis: characteristics and outcomes from a large, multi-national cohort. PLoS One. 2013
May 17;8(5):e63181. doi: 10.1371/journal.pone.0063181. Print 2013. PubMed PMID: 23690995;
118: Colson P, Fancello L, Gimenez G, Armougom F, Desnues C, Fournous G, Yoosuf N, Million M,
La Scola B, Raoult D. Evidence of the megavirome in humans. J Clin Virol. 2013 Jul;57(3):191-200.
doi: 10.1016/j.jcv.2013.03.018. Epub 2013 May 8. PubMed PMID: 23664726.
119: Boutellis A, Mediannikov O, Bilcha KD, Ali J, Campelo D, Barker SC, Raoult D. Borrelia
recurrentis in head lice, Ethiopia. Emerg Infect Dis. 2013 May;19(5):796-8. doi:
10.3201/eid1905.121480. PubMed PMID: 23648147; PubMed
120: Bousbia S, Raoult D, La Scola B. Pneumonia pathogen detection and microbial interactions in
polymicrobial episodes. Future Microbiol. 2013 May;8(5):633-60. doi: 10.2217/fmb.13.26. Review.
22/30
121: Seng P, Abat C, Rolain JM, Colson P, Lagier JC, Gouriet F, Fournier PE, Drancourt M, La Scola
B, Raoult D. Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact
of matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol.
2013 Jul;51(7):2182-94. doi: 10.1128/JCM.00492-13. Epub 2013 May 1. PubMed PMID:
122: Khelaifia S, Raoult D, Drancourt M. A versatile medium for cultivating methanogenic archaea.
PLoS One. 2013 Apr 17;8(4):e61563. doi: 10.1371/journal.pone.0061563. Print 2013. PubMed
123: Rolain JM, Vayssier-Taussat M, Saisongkorh W, Merhej V, Gimenez G, Robert C, Le Rhun D,
Dehio C, Raoult D. Partial disruption of translational and posttranslational machinery reshapes
growth rates of Bartonella birtlesii. MBio. 2013 Apr 23;4(2):e00115-13. doi: 10.1128/mBio.0011513. PubMed PMID: 23611908; PubMed Central PMCID: PMC3638310.
124: Boutellis A, Veracx A, Abrahão J, Raoult D. Amazonian head lice-specific genotypes are
putatively pre-Columbian. Am J Trop Med Hyg. 2013 Jun;88(6):1180-4. doi: 10.4269/ajtmh.120766. Epub 2013 Apr 22. PubMed PMID: 23610158; PubMed Central PMCID: PMC3752820.
125: Sekeyová Z, Socolovschi C, Spitalská E, Kocianová E, Boldiš V, Diaz MQ, Berthová L,
Bohácsová M, Valáriková J, Fournier PE, Raoult D. Update on rickettsioses in Slovakia. Acta Virol.
2013;57(2):180-99. Review. PubMed PMID: 23600876.
126: Gaia M, Pagnier I, Campocasso A, Fournous G, Raoult D, La Scola B. Broad spectrum of
mimiviridae virophage allows its isolation using a Mimivirus reporter. PLoS One. 2013 Apr
15;8(4):e61912. doi: 10.1371/journal.pone.0061912. Print 2013. PubMed PMID: 23596530;
127: Cayrou C, Sambe B, Armougom F, Raoult D, Drancourt M. Molecular diversity of the
Planctomycetes in the human gut microbiota in France and Senegal. APMIS. 2013
Nov;121(11):1082-90. doi: 10.1111/apm.12087. Epub 2013 Apr 18. PubMed PMID: 23594317.
128: Saby L, Laas O, Habib G, Cammilleri S, Mancini J, Tessonnier L, Casalta JP, Gouriet F, Riberi
A, Avierinos JF, Collart F, Mundler O, Raoult D, Thuny F. Positron emission tomography/computed
tomography for diagnosis of prosthetic valve endocarditis: increased valvular 18Ffluorodeoxyglucose uptake as a novel major criterion. J Am Coll Cardiol. 2013 Jun 11;61(23):237482. doi: 10.1016/j.jacc.2013.01.092. Epub 2013 Apr 10. PubMed PMID: 23583251.
129: Khelaifia S, Brunel JM, Raoult D, Drancourt M. Hydrophobicity of imidazole derivatives
correlates with improved activity against human methanogenic archaea. Int J Antimicrob Agents.
2013 Jun;41(6):544-7. doi: 10.1016/j.ijantimicag.2013.02.013. Epub 2013 Apr 3. PubMed PMID:
23561316.
130: Yutin N, Colson P, Raoult D, Koonin EV. Mimiviridae: clusters of orthologous genes,
reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol
J. 2013 Apr 4;10:106. doi: 10.1186/1743-422X-10-106. PubMed PMID: 23557328; PubMed
131: Gouba N, Raoult D, Drancourt M. Plant and fungal diversity in gut microbiota as revealed by
molecular and culture investigations. PLoS One. 2013;8(3):e59474.
doi: 10.1371/journal.pone.0059474. Epub 2013 Mar 15. PubMed PMID: 23555039;
132: Djiba ML, Mediannikov O, Mbengue M, Thiongane Y, Molez JF, Seck MT, Fenollar F, Raoult D,
Ndiaye M. Survey of Anaplasmataceae bacteria in sheep from Senegal. Trop Anim Health Prod.
2013 Oct;45(7):1557-61. doi: 10.1007/s11250-013-0399-y. Epub 2013 Apr 4. PubMed PMID:
23553260.
133: Million M, Walter G, Bardin N, Camoin L, Giorgi R, Bongrand P, Gouriet F, Casalta JP, Thuny F,
Habib G, Raoult D. Immunoglobulin G anticardiolipin antibodies and progression to Q fever
endocarditis. Clin Infect Dis. 2013 Jul;57(1):57-64. doi: 10.1093/cid/cit191. Epub 2013 Mar 26.
PubMed PMID:
23532474.
23/30
134: Gouriet F, Saby L, Delaunay E, Cammilleri S, le Dolley Y, Riberi A, Casalta JP, Habib G,
Raoult D. Incidental diagnosis of colonic tumor by PET/CT in infectious endocarditis. J Infect. 2013
Jul;67(1):88-90. doi:
10.1016/j.jinf.2013.03.004. Epub 2013 Mar 22. PubMed PMID: 23523828.
135: Chirouze C, Athan E, Alla F, Chu VH, Ralph Corey G, Selton-Suty C, Erpelding ML, Miro JM,
Olaison L, Hoen B; International Collaboration on Endocarditis Study Group. Enterococcal
endocarditis in the beginning of the 21st century: analysis from the International Collaboration on
Endocarditis-Prospective Cohort Study.
Clin Microbiol Infect. 2013 Dec;19(12):1140-7. doi: 10.1111/1469-0691.12166. Epub
2013 Mar 20. PubMed PMID: 23517406.
136: Fenollar F, Lagier JC, Rolain JM, Célard M, Bouchot O, Eicher JC, Lepidi H, Raoult D.
Tropheryma whipplei endocarditis relapses after treatment with trimethoprim/sulfamethoxazole.
Int J Antimicrob Agents. 2013 Jun;41(6):592-4. doi: 10.1016/j.ijantimicag.2013.02.003. Epub
2013 Mar 15. PubMed PMID: 23507410.
137: Raoult D. It is about time physicians and clinical microbiologists in infectious diseases
investigated the aetiology of obesity. Clin Microbiol Infect. 2013 Apr;19(4):303-4. doi:
10.1111/1469-0691.12139. PubMed PMID: 23506524.
138: Ratmanov P, Mediannikov O, Raoult D. Vectorborne diseases in West Africa: geographic
distribution and geospatial characteristics. Trans R Soc Trop Med Hyg. 2013 May;107(5):273-84.
doi: 10.1093/trstmh/trt020. Epub 2013 Mar 10. Review. PubMed PMID: 23479360.
139: Bousbia S, Papazian L, Saux P, Forel JM, Auffray JP, Martin C, Raoult D, La Scola B. Serologic
prevalence of amoeba-associated microorganisms in intensive care unit pneumonia patients. PLoS
One. 2013;8(3):e58111. doi:n 10.1371/journal.pone.0058111. Epub 2013 Mar 1. PubMed PMID:
23469263; PubMed
140: Drali R, Boutellis A, Raoult D, Rolain JM, Brouqui P. Distinguishing body lice from head lice by
multiplex real-time PCR analysis of the Phum_PHUM540560 gene. PLoS One. 2013;8(2):e58088.
doi: 10.1371/journal.pone.0058088. Epub 2013 Feb 28. PubMed PMID: 23469145; PubMed Central
PMCID: PMC3585238.
141: Edouard S, Parola P, Socolovschi C, Davoust B, La Scola B, Raoult D. Clustered cases of
Rickettsia sibirica mongolitimonae infection, France. Emerg Infect Dis. 2013 Feb;19(2):337-8.
142: Million M, Angelakis E, Maraninchi M, Henry M, Giorgi R, Valero R, Vialettes B, Raoult D.
Correlation between body mass index and gut concentrations of Lactobacillus reuteri,
Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli. Int J Obes (Lond). 2013
Nov;37(11):1460-6. doi: 10.1038/ijo.2013.20. Epub 2013 Mar 5. PubMed PMID: 23459324;
PubMed CentralPMCID: PMC3826031.
143: Colson P, Gouriet F, Badiaga S, Tamalet C, Stein A, Raoult D. Real-time laboratory
surveillance of sexually-transmissible infections in Marseille University hospitals reveals rise of
gonorrhoea, syphilis and human immunodeficiency virus seroconversions in 2012. Euro Surveill.
2013 Feb 14;18(7):4. PubMed PMID: 23449184.
144: Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D. The proof of
concept that culturomics can be superior to metagenomics to study atypical stool samples. Eur J
Clin Microbiol Infect Dis. 2013 Aug;32(8):1099. doi: 10.1007/s10096-013-1843-7. Epub 2013 Feb
21. PubMed PMID: 23430196.
145: Gouriet F, Bayle S, Le Dolley Y, Seng P, Cammilleri S, Stein A, Casalta JP, Habib G, Raoult D.
Infectious endocarditis detected by PET/CT in a patient with a prosthetic knee infection: case report
and review of the literature. Scand J Infect Dis. 2013 Jul;45(7):570-4. doi:
10.3109/00365548.2013.767472. Epub 2013 Feb 21. Review. PubMed PMID: 23427876.
146: Mediannikov O, Abdissa A, Socolovschi C, Diatta G, Trape JF, Raoult D. Detection of a new
Borrelia species in ticks taken from cattle in Southwest Ethiopia. Vector Borne Zoonotic Dis. 2013
Apr;13(4):266-9. doi: 10.1089/vbz.2011.0874. Epub 2013 Feb 19. PubMed PMID: 23421894.
24/30
147: Socolovschi C, Audoly G, Raoult D. Connection of toxin-antitoxin modules to inoculation
eschar and arthropod vertical transmission in Rickettsiales. Comp Immunol Microbiol Infect Dis.
2013 Mar;36(2):199-209. doi: 10.1016/j.cimid.2013.01.001. Epub 2013 Feb 13. PubMed PMID:
23414774.
148: Keita AK, Socolovschi C, Ahuka-Mundeke S, Ratmanov P, Butel C, Ayouba A, Inogwabini BI,
Muyembe-Tamfum JJ, Mpoudi-Ngole E, Delaporte E, Peeters M, Fenollar F, Raoult D. Molecular
evidence for the presence of Rickettsia Felis in the feces of wild-living African apes. PLoS One.
2013;8(2):e54679. doi: 10.1371/journal.pone.0054679. Epub 2013 Feb 6. PubMed PMID:
23405087; PubMed
149: Grisoli D, Raoult D. Knowledge versus consensus: the endocarditis prophylaxis paradigm. Clin
Microbiol Infect. 2013 Mar;19(3):207-8. doi: 10.1111/1469-0691.12121. Epub 2013 Feb 11.
150: Elbir H, Henry M, Diatta G, Mediannikov O, Sokhna C, Tall A, Socolovschi C, Cutler SJ, Bilcha
KD, Ali J, Campelo D, Barker SC, Raoult D, Drancourt M. Multiplex real-time PCR diagnostic of
relapsing
fevers
in
Africa.
PLoS
Negl
Trop
Dis.
2013;7(1):e2042.
doi:
10.1371/journal.pntd.0002042. Epub 2013 Jan 31. PubMed PMID: 23390560; PubMed Central
PMCID: PMC3561136.
151: Slimani M, Pagnier I, Raoult D, La Scola B. Amoebae as battlefields for bacteria, giant viruses,
and virophages. J Virol. 2013 Apr;87(8):4783-5. doi: 10.1128/JVI.02948-12. Epub 2013 Feb 6.
152: Balique F, Colson P, Barry AO, Nappez C, Ferretti A, Moussawi KA, Ngounga T, Lepidi H, Ghigo
E, Mege JL, Lecoq H, Raoult D. Tobacco mosaic virus in the lungs of mice following intra-tracheal
inoculation. PLoS One. 2013;8(1):e54993. doi: 10.1371/journal.pone.0054993. Epub 2013 Jan 30.
PubMed PMID: 23383021; PubMed
153: Eldin C, Angelakis E, Renvoisé A, Raoult D. Coxiella burnetii DNA, but not viable bacteria, in
dairy products in France. Am J Trop Med Hyg. 2013 Apr;88(4):765-9. doi: 10.4269/ajtmh.12-0212.
Epub 2013 Feb 4. PubMed PMID: 23382158; PubMed Central PMCID: PMC3617866.
154: Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C,
Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I,
Finkler A, Heng Tan CS, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden
DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult
D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus
BJ. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early
evolution of tyrosine kinase signaling. Genome Biol. 2013 Feb 1;14(2):R11. doi: 10.1186/gb-201314-2-r11. PubMed PMID: 23375108; PubMed Central PMCID: PMC4053784.
155: Thuny F, Gaubert JY, Jacquier A, Tessonnier L, Cammilleri S, Raoult D, Habib G. Imaging
investigations in infective endocarditis: current approach and perspectives. Arch Cardiovasc Dis.
2013 Jan;106(1):52-62. doi: 10.1016/j.acvd.2012.09.004. Epub 2012 Dec 25. Review. PubMed
PMID: 23374972.
156: Murillo N, Raoult D. Skin microbiota: overview and role in the skin diseases acne vulgaris and
rosacea. Future Microbiol. 2013 Feb;8(2):209-22. doi: 10.2217/fmb.12.141. Review. PubMed
PMID: 23374126.
157: Moos V, Feurle GE, Schinnerling K, Geelhaar A, Friebel J, Allers K, Moter A, Kikhney J,
Loddenkemper C, Kühl AA, Erben U, Fenollar F, Raoult D, Schneider T. Immunopathology of
immune reconstitution inflammatory syndrome in Whipple's disease. J Immunol. 2013 Mar
1;190(5):2354-61. doi: 10.4049/jimmunol.1202171. Epub 2013 Jan 30. PubMed PMID: 23365082.
158: Fournier PE, Gouriet F, Gimenez G, Robert C, Raoult D. Deciphering genomic virulence traits
of a Staphylococcus epidermidis strain causing native-valve endocarditis. J Clin Microbiol. 2013
May;51(5):1617-21. doi: 10.1128/JCM.02820-12. Epub 2013 Jan 30. PubMed PMID: 23363834;
PubMed Central
PMCID: PMC3647915.
25/30
159: Sokhna C, Mediannikov O, Fenollar F, Bassene H, Diatta G, Tall A, Trape JF, Drancourt M,
Raoult D. Point-of-care laboratory of pathogen diagnosis in rural Senegal. PLoS Negl Trop Dis.
2013;7(1):e1999. doi: 10.1371/journal.pntd.0001999.
Epub 2013 Jan 17. PubMed PMID:
160: Wetzstein N, Fenollar F, Buffet S, Moos V, Schneider T, Raoult D. Tropheryma whipplei
genotypes 1 and 3, Central Europe. Emerg Infect Dis. 2013 Feb;19(2):341-2. doi:
10.3201/eid1902.120709. PubMed PMID: 23347594; PubMed
161: Million M, Raoult D. Species and strain specificity of Lactobacillus probiotics effect on weight
regulation. Microb Pathog. 2013 Feb;55:52-4. doi: 10.1016/j.micpath.2012.09.013. PubMed PMID:
23332210.
162: Golesi F, Brignatz J, Bellenfant M, Raoult D, Drancourt M. Mycobacterium tuberculosis Beijing
outbreak in a school in Marseille, France, 2012. Euro Surveill. 2013 Jan 10;18(2). pii: 20354.
163: Boughalmi M, Saadi H, Pagnier I, Colson P, Fournous G, Raoult D, La Scola B. Highthroughput isolation of giant viruses of the Mimiviridae and Marseilleviridae families in the Tunisian
environment. Environ Microbiol. 2013 Jul;15(7):2000-7. doi: 10.1111/1462-2920.12068. Epub
2013 Jan 9. PubMed PMID: 23298151.
164: Dubourg G, Lagier JC, Armougom F, Robert C, Audoly G, Papazian L, Raoult D. High-level
colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment.
Int J Antimicrob Agents. 2013 Feb;41(2):149-55.
doi: 10.1016/j.ijantimicag.2012.10.012. Epub 2013 Jan 5. PubMed PMID: 23294932.
165: Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D.
The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by
culturomics than by metagenomics. Eur J Clin Microbiol Infect Dis. 2013 May;32(5):637-45. doi:
10.1007/s10096-012-1787-3. Epub 2013 Jan 6. PubMed PMID: 23291779.
166: Yelnik C, Cousens R, Raoult D. CMI Editorial Report 2013. Clin Microbiol Infect. 2013
Jan;19(1):1-7. doi: 10.1111/1469-0691.12065. PubMed PMID: 23279285.
167: Million M, Angelakis E, Drissi F, Raoult D. Occam's razor and probiotics activity on Listeria
monocytogenes. Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):E1. doi: 10.1073/pnas.1218418110.
Epub 2012 Dec 27. PubMed PMID:
168: Keita AK, Raoult D, Fenollar F. Tropheryma whipplei as a commensal bacterium. Future
Microbiol. 2013 Jan;8(1):57-71. doi: 10.2217/fmb.12.124. Review. PubMed PMID: 23252493.
169: Keita AK, Mediannikov O, Ratmanov P, Diatta G, Bassene H, Roucher C, Tall A, Sokhna C,
Trape JF, Raoult D, Fenollar F. Looking for Tropheryma whipplei source and reservoir in rural
Senegal. Am J Trop Med Hyg. 2013 Feb;88(2):339-43. doi: 10.4269/ajtmh.2012.12-0614. Epub
2012 Dec 18. PubMed PMID: 23249690; PubMed
170: Yssouf A, Flaudrops C, Drali R, Kernif T, Socolovschi C, Berenger JM, Raoult D, Parola P.
Matrix-assisted laser desorption ionization-time of flight mass spectrometry for rapid identification
of tick vectors. J Clin Microbiol. 2013 Feb;51(2):522-8. doi: 10.1128/JCM.02665-12. Epub 2012
Dec 5. PubMed PMID: 23224087; PubMed Central PMCID: PMC3553915.
171: Lamas Cda C, Ramos RG, Lopes GQ, Santos MS, Golebiovski WF, Weksler C, Ferraiuoli GI,
Fournier PE, Lepidi H, Raoult D. Bartonella and Coxiella infective endocarditis in Brazil: molecular
evidence from excised valves from a cardiac surgery referral center in Rio de Janeiro, Brazil, 1998
to 2009. Int J Infect Dis. 2013 Jan;17(1):e65-6. doi: 10.1016/j.ijid.2012.10.009. Epub 2012 Dec
3. PubMed PMID: 23219032.
172: Ratmanov P, Bassene H, Fenollar F, Tall A, Sokhna C, Raoult D, Mediannikov O. The
Correlation of Q fever and Coxiella burnetii DNA in household environments in rural Senegal. Vector
Borne Zoonotic Dis. 2013 Jan;13(1):70-2. doi: 10.1089/vbz.2012.1060. Epub 2012 Nov 30.
26/30
173: Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D. "Marseilleviridae", a new
family of giant viruses infecting amoebae. Arch Virol.
2013 Apr;158(4):915-20. doi:
10.1007/s00705-012-1537-y. Epub 2012 Nov 29. PubMed PMID: 23188494.
174: Singh S, Eldin C, Kowalczewska M, Raoult D. Axenic culture of fastidious and intracellular
bacteria. Trends Microbiol. 2013 Feb;21(2):92-9. doi: 10.1016/j.tim.2012.10.007. Epub 2012 Nov
23. Review. PubMed PMID: 23182864.
175: Cautela J, Alessandrini S, Cammilleri S, Giorgi R, Richet H, Casalta JP, Habib G, Raoult D,
Mundler O, Deharo JC. Diagnostic yield of FDG positron-emission tomography/computed
tomography in patients with CEID infection: a pilot study. Europace. 2013 Feb;15(2):252-7. doi:
10.1093/europace/eus335. Epub 2012 Nov 12. PubMed PMID: 23148119.
176: Bonnave PE, Raoult D, Drancourt M. Gastric aspiration is not necessary for the diagnosis of
pulmonary tuberculosis. Eur J Clin Microbiol Infect Dis. 2013 Apr;32(4):569-71. doi:
10.1007/s10096-012-1776-6. Epub 2012 Nov 11. PubMed PMID:
23143083.
177: Mangot-Bertrand J, Fenollar F, Bretelle F, Gamerre M, Raoult D, Courbiere B.
Molecular diagnosis of bacterial vaginosis: impact on IVF outcome. Eur J Clin Microbiol Infect Dis.
2013 Apr;32(4):535-41. doi: 10.1007/s10096-012-1770-z. Epub 2012 Nov 7. PubMed PMID:
23132689.
178: Million M, Raoult D. The role of the manipulation of the gut microbiota in obesity. Curr Infect
Dis Rep. 2013 Feb;15(1):25-30. doi: 10.1007/s11908-012-0301-5. PubMed PMID: 23129415.
179: Loyens M, Thuny F, Grisoli D, Fournier PE, Casalta JP, Vitte J, Habib G, Raoult D. Link
between endocarditis on porcine bioprosthetic valves and allergy to pork. Int J Cardiol. 2013 Jul
31;167(2):600-2. doi: 10.1016/j.ijcard.2012.09.233. Epub 2012 Oct 31. PubMed PMID: 23121916.
180: Benkouiten S, Badiaga S, Nappez C, Charrel R, Raoult D, Brouqui P. Immunity to measles,
diphtheria and tetanus in residents of homeless shelters in Marseilles, France. J Infect. 2013
Feb;66(2):189-91. doi: 10.1016/j.jinf.2012.10.023. Epub 2012 Oct 26. PubMed PMID: 23103286.
181: Diene SM, Fall B, Kempf M, Fenollar F, Sow K, Niang B, Wade B, Raoult D, Rolain JM.
Emergence of the OXA-23 carbapenemase-encoding gene in multidrug-resistant Acinetobacter
baumannii clinical isolates from the Principal Hospital of Dakar, Senegal. Int J Infect Dis. 2013
Mar;17(3):e209-10. doi: 10.1016/j.ijid.2012.09.007. Epub 2012 Oct 22. PubMed PMID: 23084970.
182: Tande AJ, Cunningham SA, Raoult D, Sim FH, Berbari EF, Patel R. A case of Q fever
prosthetic joint infection and description of an assay for detection of Coxiella burnetii. J Clin
Microbiol. 2013 Jan;51(1):66-9. doi: 10.1128/JCM.02352-12. Epub 2012 Oct 17. PubMed PMID:
183: Barsic B, Dickerman S, Krajinovic V, Pappas P, Altclas J, Carosi G, Casabé JH, Chu VH,
Delahaye F, Edathodu J, Fortes CQ, Olaison L, Pangercic A, Patel M, Rudez I, Tamin SS, Vincelj J,
Bayer AS, Wang A; International Collaboration on Endocarditis–Prospective Cohort Study
Investigators. Influence of the timing of cardiac surgery on the outcome of patients with infective
endocarditis andnstroke. Clin Infect Dis. 2013 Jan;56(2):209-17. doi: 10.1093/cid/cis878. Epub
2012 Oct 16. PubMed PMID: 23074311.
184: Diene SM, Merhej V, Henry M, El Filali A, Roux V, Robert C, Azza S, Gavory F, Barbe V, La
Scola B, Raoult D, Rolain JM. The rhizome of the multidrug-resistant Enterobacter aerogenes
genome reveals how new "killer bugs" are created because of a sympatric lifestyle. Mol Biol Evol.
2013 Feb;30(2):369-83. doi: 10.1093/molbev/mss236. Epub 2012 Oct 15. PubMed PMID:
23071100.
185: Rolain JM, Diene SM, Kempf M, Gimenez G, Robert C, Raoult D. Real-time sequencing to
decipher the molecular mechanism of resistance of a clinical pan-drug-resistant Acinetobacter
baumannii isolate from Marseille, France. Antimicrob Agents Chemother. 2013 Jan;57(1):592-6.
doi: 10.1128/AAC.01314-12. Epub 2012 Oct 15. PubMed PMID: 23070160; PubMed Central
PMCID: PMC3535948.
27/30
186: Botelho-Nevers E, Singh S, Chiche L, Raoult D. Effect of omeprazole on vacuole size in
Coxiella burnetii-infected cells. J Infect. 2013 Mar;66(3):288-9. doi: 10.1016/j.jinf.2012.10.006.
Epub 2012 Oct 13. PubMed PMID: 23068453.
187: Mediannikov O, Fenollar F, Bassene H, Tall A, Sokhna C, Trape JF, Raoult D. Description of
"yaaf", the vesicular fever caused by acute Rickettsia felis infection in Senegal. J Infect. 2013
Jun;66(6):536-40. doi: 10.1016/j.jinf.2012.10.005. Epub 2012 Oct 13. PubMed PMID: 23068450.
188: Angelakis E, Million M, D'Amato F, Rouli L, Richet H, Stein A, Rolain JM,
Raoult D. Q fever and pregnancy: disease, prevention, and strain specificity. Eur
J Clin Microbiol Infect Dis. 2013 Mar;32(3):361-8. doi: 10.1007/s10096-012-1750-3. Epub 2012
Sep 28. PubMed PMID: 23052984.
189: Herremans T, Hogema BM, Nabuurs M, Peeters M, Wegdam-Blans M, Schneeberger P, Nijhuis
C, Notermans DW, Galama J, Horrevorts A, van Loo IH, Vlaminckx B, Zaaijer HL, Koopmans MP,
Berkhout H, Socolovschi C, Raoult D, Stenos J, Nicholson W, Bijlmer H. Comparison of the
performance of IFA, CFA, and ELISA assays for the serodiagnosis of acute Q fever by quality
assessment.
Diagn
Microbiol
Infect
Dis.
2013
Jan;75(1):16-21.
doi:
10.1016/j.diagmicrobio.2012.09.001. Epub 2012 Oct 5. PubMed PMID: 23041450.
190: Raoult D, Mouffok N, Bitam I, Piarroux R, Drancourt M. Plague: history and contemporary
analysis. J Infect. 2013 Jan;66(1):18-26. doi: 10.1016/j.jinf.2012.09.010. Epub 2012 Oct 3.
Review. PubMed PMID: 23041039.
191: Vu Hai V, Almeras L, Audebert S, Pophillat M, Boulanger N, Parola P, Raoult D, Pages F.
Identification of salivary antigenic markers discriminating host exposition between two European
ticks: Rhipicephalus sanguineus and Dermacentor reticulatus. Comp Immunol Microbiol Infect Dis.
2013 Jan;36(1):39-53. doi: 10.1016/j.cimid.2012.09.003. Epub 2012 Oct 4. PubMed PMID:
23040662.
192: Fancello L, Trape S, Robert C, Boyer M, Popgeorgiev N, Raoult D, Desnues C. Viruses in the
desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian
Sahara. ISME J. 2013 Feb;7(2):359-69. doi: 10.1038/ismej.2012.101. Epub 2012 Oct 4. PubMed
193: Kempf M, Rolain JM, Azza S, Diene S, Joly-Guillou ML, Dubourg G, Colson P, Papazian L,
Richet H, Fournier PE, Ribeiro A, Raoult D. Investigation of Acinetobacter baumannii resistance to
carbapenems in Marseille hospitals, south of France: a transition from an epidemic to an endemic
situation. APMIS. 2013 Jan;121(1):64-71. doi: 10.1111/j.1600-0463.2012.02935.x. Epub 2012
Jun 28. PubMed PMID: 23030740.
194: Wolcott R, Costerton JW, Raoult D, Cutler SJ. The polymicrobial nature of biofilm infection.
Clin Microbiol Infect. 2013 Feb;19(2):107-12. doi: 10.1111/j.1469-0691.2012.04001.x. Epub 2012
Aug 27. Review. PubMed PMID: 22925473.
195: Keita AK, Brouqui P, Badiaga S, Benkouiten S, Ratmanov P, Raoult D, Fenollar
F. Tropheryma whipplei prevalence strongly suggests human transmission in homeless shelters. Int
J Infect Dis. 2013 Jan;17(1):e67-8. doi: 10.1016/j.ijid.2012.05.1033. Epub 2012 Jul 12. PubMed
PMID: 22795221.
196: Thuny F, Hubert S, Tribouilloy C, Le Dolley Y, Casalta JP, Riberi A, Chevalier F, Rusinaru D,
Malaquin D, Remadi JP, Ammar AB, Avierinos JF, Collart F, Raoult D, Habib G. Sudden death in
patients with infective endocarditis: findings from a large cohort study. Int J Cardiol. 2013 Jan
10;162(2):129-32. doi: 10.1016/j.ijcard.2012.06.059. Epub 2012 Jul 2. PubMed PMID: 22759277.
28/30
THESES de DOCTORAT ANNÉE 2013
NOM
Sujet
Date thèse
APPELT Sandra
Paléomicrobiologie des microbiotes intestinaux
09/12/2013
BALIQUE Fanny
BERRAZEG Meryem
BOUCHERIT Nicolas
BOUGHALMI Mondher
BOUTELLIS Amina
DJEGHADER Ahmed
ELKAOUTARI
Abdessamad
FANCELO Laura
Les virus de plantes dans les produits alimentaires et
les prélèvements cliniques
Développement des nouveaux outils de surveillance de
l’émergence des bactéries à Gram négatif
multirésistantes
Facteur de virulence du LPS de Coxiella Burnetii
Isolement à haut débit des virus géants et virophages
à partir de différentes niches écologiques et micro
niches animales.
ETUDE DES VARIATIONS PHENOTYPIQUES ET
GENOTYPIQUES DES POUX DE TETE ET DES POUX DE
CORPS DE L'HOMME
Etude des protéines DING
Exploration des enzymes du microbiome intestinal
humain impliquées dans la digestion des sucres
complexes
Métagenomique virale des pathologies sans agent
étiologique connu.
10/07/2013
03/06/2013
02/12/2013
12/12/2013
09/09/2013
26/11/2013
06/12/2013
01/10/2013
GAIA Morgan
Les virophages de Mimiviridae
10/12/2013
GHODBANE Ramzi
Culture des mycobactéries
26/11/2013
GHOTTARD Guillaume
Etude des PTE hyperthermostables
29/10/2013
GORVEL Laurent
Interaction cellules et pathogènes interacellulaire
12/12/2013
GOUBA Nina
HIBLOT Julien
Molecular identification and pathogenic amoeba and
related organism
Amélioration rationalisée de l’enzyme
hyperthermostable SsoPox. Perspectives de
développement d’un bio-décontaminant
d’organophosphorés et d’un agent anti-virulence
bactérienne.
09/12/2013
13/06/2013
KEITA Alpha
Épidémiologie de Tropheryma whipplei
08/10/2013
KERNIF TAHAR
Etudes des relations Puces et Bactéries en Zone
Méditerranéenne et Tropicale: Épidémiologie
moléculaire et modèles Expérimentaux
14/01/2013
KHELAIFIA Saber
Les archaea
07/06/2013
LAGIER Jean-Christophe
LE Thi Phuong
MATHEW Mano Joseph
MERAJH Vikram
MILLION MATHIEU
Diversité du microbiote digestif humain par
culturomics et pyroséquençage
Transferts horizontaux de gènes chez les alphaproteobacteria
Bacterial evolution and genomic
Analyse transinformique des malades atteints de
fièvre Q. "A transcriptional approach to define new
biomarkers : Application to Q fever"
Caractérisation des altérations du microbiote digestif
associées à l'obésité et rôle de la manipulation du
microbiote digestif dans l'obésité
15/05/2013
14/03/2013
19/12/2013
07/05/2013
15/05/2013
29/30
MUHAMMED AMEEN
Sirwan
Phenotypic characterization of mycobacterium
tuberculosis
26/11/2013
MURILLO Nathalia
Microbiote du Demodex associé à la rosacée
18/12/2013
OUEDRAOGO Richard
SAADI/BOUGHALMI
Hamene
Activation de monocytes macrophages en
spectrométrie de masse
Isolements à hauts débits, identification moléculaire
des virus géants et virophages isolés chez les patients
Tunisiens atteints de pneumopathies
02/12/2013
12/12/2013
SASSI Mohamed
Identification et isolement d'un bactériovirophage
25/09/2013
SENG PISETH
Application de la spectrométrie de masse (MALDITOF) en microbiologie clinique
09/07/2013
SENTAUSA Erwin
Génomique comparative intraspécifique de Rickettsia
13/12/2013
SHARMA POONAM
SLIMANI Meriem
VU HAI Vinh
NIYAZ YOOSUF
Study of the respiratory microbiota in patients with
cystic fibrosis
Identification des bactéries responsables d'infections
urinaires par spectrométrie de masse
Salivary antigenic proteins from Ixodidae and
Anopheles: a novel tool for vector-borne diseases
monitoring
Génomes de Mimiviruses de Amoeba
19/12/2013
24/09/2013
19/11/2013
10/12/2013
30/30

unite de recherche - Faculté de Médecine

Transcription

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