synthetical methods for the preparation of hetarenes
Transcription
synthetical methods for the preparation of hetarenes
MAIN SYNTHETICAL METHODS FOR THE PREPARATION OF HETARENES 1. Ring Synthesis Strategy 1.1. Hydrolytic disconnection 1.2. Redox disconnection 1.3. The mains precursors 1.3.1. Precursors as nucleophiles 1.3.2. Precursors as electrophiles 1.3.3. Precursors as both electrophiles and nucleophiles 2. Substituent modification 3. Nomenclature: I.U.P.A.C., general rules References: 1. Alan R. Katritzky, A. F. Pozharskii Handbook of Heterocyclic Chemistry 2nd Edition, Pergamon 2000 2. Alan R. Katritzky Short Course in Heterocyclic Chemistry for Ph. D. Students, University of Florida 1996/1997 3. David T. Davis Chimie des Hétérocycles Aromatiques De Boeck Université 1997, Oxford University Press 1992 4. René Milcent Chimie Organique Hétérocyclique EDP Sciences 2003, www.edpsciences.org 5. Jonathan Clayden, Nick Greeves, Stuart Warren, Peter Wothers Organic Chemistry, De Boeck Diffusion s.a., 2003, Oxford University Press 2001, www.deboeck.com Modifications (improvements, additions, corrections, up to dates etc.) are subjected to no notice. Mircea Darabantu, MASTER DIA. I N T R O D-1 MAIN SYNTHETICAL METHODS FOR THE PREPARATION OF HETARENES D e f i n i t i o n : the term h e t a r e n e s designes all heterocyclic compounds possessing aromatic character according to Hückel rule. Synthesis Ring Synthesis Combination of the Two Substituent Modification 1. Ring Synthesis Strategy : the following three factors increase the importance of the ring synthesis a) Fused Ring vs. Mono cyclic b) Five vs. Six memebered Ring c) More Hetero atoms N pyridine N quinoline N acridine ) Ii it is easier to synthesise a second ring onto a first one than to synhtesise a monocyclic compound. X pyrrole X=NH thiophene X=S furane X=O X indole benzothiophene benzofurane N N pyrimidine N N H imidazole N N quinazoline N N H benzimidazole X carbazole dibenzothiophene dibenzofurane N N The more heteroatoms one has in the ring, the more methods of synthesis they are. N N pteridine N N N H purine N )) ))) Substitution reactions tend to be easier on the whole when one has fewer heteroatoms in the ring. Mircea Darabantu, MASTER DIA. I N T R O D-2 Baldwin’s Rules for 3 to 7 Membered Ring Closure J. E. Baldwin J. Chem. Soc., Chem. Commun. 1976, 734 - Z: sp3 Exo - Tet Z X X Z X Z Exo-Tet: From 3 to 7 membered rings - Exo-Trig: From 3 to 7 membered rings Z: sp2 Exo - Trig Z X & FAVOURED Y Y & FAVOURED Y- Y Exo-Dig: From 3 to 4 membered rings - Z X & Z: sp Exo - Dig Z X Y - Y: sp3 Endo - Tet X Z X Y: sp2 Endo - Trig Z Z Endo-Trig: From 3 to 5 membered rings - & DISFAVOURED Endo-Trig: From 6 to 7 membered rings &FAVOURED Endo - Dig Z X Z - Endo-Dig: From 3 to 7 membered rings & FAVOURED Y Y i) ii) iii) iv) & FAVOURED Y Y: sp X Endo-Tet: From 5 to 6 membered rings Z X Y - & FAVOURED Y Y - X DISFAVOURED Exo-Dig: From 5 to 7 membered rings Y- all the above rules have empirical support only. disfavoured does not mean impossible but more difficult to realise. the basic support of the above rules is stereochemical (bond lenghts and bond angles). a lot of cases (before and after 1976 are in substantial accord with these rules). (Y) HO (Z) (Z=Y) CH=O OH HO Exo-Trig 6 OH OH (X) CH2OH D-glucose Endo-Trig Ring Closure 5 Membered ring OH HO O (X) (X)HO N Z OH Ar Y CH2OH Pyranose ! (Z) O NH (X) (Y) Ar chain ring tautomerism D. E. Bergmann, Chem. Rev. 1953, 53, 309-353 L. Lázár, F. Fülöp, Eur. J. Org. Chem. 2003, 3025-3042 Mircea Darabantu, MASTER DIA. I N T R O D-2a Examples : exo-cyclisations according to stereoelectronic requirements in the transition state . 2 3 2 Br 1 + Br- .. 4 5 - 3 5 six membered 6-exo-tet cyclisation (Intramolecular SN2) FAVOURED Stereoelectronically 2 1 H2N 3 4 six membered 6-exo-trig cyclisation (Intramolecular RA) FAVOURED Stereoelectronically Br N H aziridine H 2 1O 5 O O OH O five membered (tetrahydrofuran-2-one) G e n e r a l i s a t i o n: lone Y .. pair (donor) X σ∗ empty (acceptor) n-exo-tet cyclisation k=0-4 FAVOURED Stereoelectronically five membered 4 5-exo-trig cyclisation (Intramolecular SN2) FAVOURED Stereoelectronically ( )k 5 5-exo-dig cyclisation (Intramolecular RA) FAVOURED Stereoelectronically (three membered) 3-exo-tet cyclisation (Intramolecular SN2) FAVOURED Stereoelectronically . 3 6 3 2 1 . 4 6 . 1 ( )k lone Y .. pair (donor) X π∗ empty (acceptor) n-exo-trig cyclisation k=0–4 FAVOURED Stereoelectronically exo-dig cyclisations are favoured for five to seven membered rings Mircea Darabantu, MASTER DIA. I N T R O D-2b Examples: endo-cyclisations according to stereoelectronic requirements in the transition state NOTE: only 6- and 7-endo-tet cyclisation are favoured all 3 – 7-endo-dig cyclisations are favoured almost all 3 – 7-endo-tet cyclisations are less favoured Plausible but… + + O O 3 4 2 1NH .. 2 + O H OEt OEt HN 5 π∗ empty N .. (acceptor) H lone pair (donor) 5-endo-trig cyclisation DISFAVOURED (Intramolecular 1,4-addition) lone pair H (donor) H N .. O OEt OEt π∗ empty (acceptor) Inappropriate orientation Too far... This is the real: 3 4 2 5 1NH .. 2 EtO HN O 5-exo-trig cyclisation FAVOURED O A 6-endo-trig cyclisation: favoured, occuring in 89 % yield O MeO2C MeOOC O Base MeO2C ∗ π .. 2 O O O 3 4 MeO2C O O 1 6 O 5 H Appropriate orientation trans stereochemistry with respect to cyclanone ring A 5-endo-dig cyclisation: favoured π∗ empty (acceptor) inapropriate orientation O O Base OH i) 5-endo-dig cyclisation FAVOURED + ii) H Ar 2 1O - 3 4 O 5 Ar O O _ O .. lone pair (donor) π∗ empty (acceptor) apropriate orientation Mircea Darabantu, MASTER DIA. I N T R O D-3 1.1. Hydrolytic disconnection - hydrolytic disconnections of the double bonds are very useful since most of the ring closures to afford heterocyclic systems are simple condensation H+ / -H2O i) Nucleophilic addition ii) Elimination R1 R1 N R3 + H2O c o n d e n s a t io n O + H2N-R3 R2 Imine Schiff base R2 Example 1: originates from... R1 R1 N R3 good O + H2N-R3 R2 R2 Target Compound R1 precursors bad NH + HO-R3 R2 o p t i o n !! o p t i o n !! precursors R1 OR3 R2 NH2 e.g. Example 2: hydrolytic disconnection EWG EWG O + precursors H2C (EWG) (EWG) EWG: Electro(no) Withdrawing Group CO, COOR, CN, etc. Example 3: N heterocyclic compound seen as a cyclic imine R N heterocyclic compound seen as a cyclic amine precursor: good option !! R R O NH2 R NH OH R H2N - NH3 O ? bad option Mircea Darabantu, MASTER DIA. I N T R O D-4 Example 4: Imine or enamine ? It doesn’t matter… H H sp2 R sp3 N H (masked) enamine R H sp2 R OH H H R sp3 N H (masked) enamine NH2 H H R O NH2 N imine Example 5: Retrosynthesis of pyrroles seen as hydrolytic disconnection: basic basic center +H+ +H+ center 4 3 H3C 2 CH3 N1 O H H 2,5-dimethylpyrrole seen as acid double enamine center -H+ enol H3C CH3 NH H 5 H3C H3C CH3 CH3 O O NH3 O N H acid -H+ center enamine Example 6: the importance of the formal charges Rings containing Nitrogen +1 +1 +1 H -1 H H H -2 +1 R -3 N H +1 +1 +2 +1 R OH -2 +1 +1 R NH2 O +1 -3 2 x (+1) -2 Rings containing Sulphur the best precursor +1 +1 +1 H -1 H NH2 2 x (+1) -3 H H -2 +1 R -2 S +1 +1 +2 +1 R OH -2 +1 O +1 -2 -2 Rings containing Oxygen SH +1 -2 +1 H -1 H best X electrophile H -2 +1 R -2 O +1 +1 R +1 OH -2 OH +1 -2 +2 +1 R +1 O -2 H & R +1 +1 H +1 R SH H +1 OH -2 Y % best nucleophile Mircea Darabantu, MASTER DIA. I N T R O D-5 To be kept in mind: 1. If a hydrolytic disconnection appears suitable, the best pair nucleophile-electrophile sould be considered 2. All cyclisations (or cyclocondensations) involve classic tautomerism: keto-enolic, imino-enamine, etc. 3. During cyclocondensation (or retrosynthetic hydrolytic disconnection) no global redox process, involving the whole molecule occurs. 1.2. Redox disconnection -this methodology provides information about the general strategy to be used to access the target compound: is there any redox step ? Example 1: - a five membered hetarene: it looks like "organic" N H i) cut (remove) the bonds between the organic and inorganic parts ii) add the formal charges +1 O add two functional groups at both ends of the "cation" +1 to "neutralise" charges -1 HO ] N -1-3 H O -1 [OH +1 -3 +1 3x(+1) NH3 precursors it looks like "inorganic" it sounds like ammonia Obs: the structure of the target compound (bond connection and aromaticity) is automatically issued by preserving the formal charges of each of the involved (hetero)atoms: no redox step in the synthesis Example 2: - a six membered hetarene redox disconnection +2 H3C N CH3 h H3C +2 +1 CH3 N3- H3C +1 CH3 -2 -2 O OH +1 -3 NH 3 3x(+1) ??? 1 2[H] H3C 3 H3C 2 O 7 5 4 CH3 6 O CH3 O O 2,6-heptanedione Z-1,4-diketone currently nonavailable commercial product difficult to obtain is the above disconnection useful for a chemist ? Why ? a) Because it provides rapidly the type of precursors b) Because it provides rapidly the most convenient precursors. c) Because it infers that if, for reason of availability, a redox step is revealed (e.g. reduction) by the redox disconnection, in the synthesis of the target molecule a redox step must be accomplished: e.g. oxidation. ☺ Mircea Darabantu, MASTER DIA. I N T R O D-6 The direct synthesis: + NH3 -H2O H3C OO CH3 H3C O CH3 H3C NH -H2O CH3 CH3 -H2O H3C 6 N 2 CH3 N H3C NH2 -H:- anticipated oxidation step H 4 3 + [O] 5 H H3C N OH H CH3 O 1 H 2,6-dimethylpyridine -H+ 1.3. The main precursors 1.3.1. Precursors as Nucleophiles: this is the traditional route to bring heteroatoms (N, S, O) in the target compound Example 1: b r i n g i n g one heteroatom in the target compound: NH3 + 4 H2S 3 4 2 5 + H2 O 3 2 5 N1 H + 4 2 5 S 3 O 1 1 Example 2: b r i n g i n g two heteroatoms in the target compound: H2N-NH2 HO-NH2 hydrazine hydroxylamine + + 4 3 4 N2 5 5 N1 H pyrazole S + 4 NH2 isoxazole N3 5 S 2 NH2 1 NH2 S R 4 N3 5 S 2 R 1 2-substituted thiazoles amidines NH2 O + + + N2 O1 Example 3: b r i n g i n g three atoms in the target compound: thiourea thioamides urea NH2 3 NH2 NH2 HN 6 HN 1 guanidine 4 5 5 4 6 O 2 N3 2-pyrimidone NH2 R HN + 4 N3 + 5 2 N1 NH2 R 6 N3 2 N1 2-substituted pyrimidines NH2 Mircea Darabantu, MASTER DIA. I N T R O D-7 Example 4: b r i n g i n g three, four and five atoms in the target compound: benzoderivatives NH2 NH2 5 + 4 7 8 N + 8 3 7 2 6 6 NH2 NH2 N N 5 1 Quinoline 5 1 2 6 3 7 4 4 3 N2 8 Quinoxaline + 1 Isoquinoline 1.3.2. Precursors as Electrophiles: Example 1: b r i n g i n g one atom: δO δ+ R LG NH2 ) 4 O R 6 NH2 Cl ) R1 O Cl N1 H 2-substituted benzimidazoles 7a R1 :NH2 4 5 :S R2 R 2 7 LG: leaving group as LG:e.g. Cl as Cl-; R'O as R'OH etc. Example 2: b r i n g i n g two atoms: δδO O δ+ δ+ δ+ δ+ R OR δδ LG LG N3 3a 5 1S N3 2 R2 2,4-disubstituted thiazoles Example 3: b r i n g i n g three atoms: δO Oδ δ+ δ+ R R 1,3-dicarbonylic compounds δ- O δ+ RO Oδ δ+ OR malonic esters O ) O 4 R 5 1X R R HX NH2 N2 O OR O R 3,5-disubstituted X = NH pyrazoles X = O isoxazoles O ) 3 OR HN NH2 R' 5 4 N3 O 6 N 1 2 R' H 2-substituted-pyrimidin-4,6-dione Mircea Darabantu, MASTER DIA. I N T R O D-8 O δO δ+ R R R ) δ+ acrylic derivatives 5 4 3 6 7 NH2 2 N 8 1 4-substituted-quinoline Example 4: b r i n g i n g four atoms: R δ+ δ+ ) R O O δ- δ1,4-diketones R δ+ δ+ 3 4 R R 5 O O X 2 R 1 H2X (X = NH, S) Note: electrophilic fragments usually do not bring heteroatoms in the target compound 1.3.3. Precursors as both Electrophiles and Nucleophiles: Example 1: b r i n g i n g two atoms: δas Nu:O δ+ R LG as E+ R2 ) R2 4 NH2 R3 O R3 R1 O δ+ O δ- as Nu:LG LG as E+ HO LG 1 O 2 R 1 H O LG 5 2,4,5-trisubstituted-oxazoles LG: leaving group as LG:e.g. Cl as Cl- O N3 LG O δ- O ) OH HO 5 OR δ+ OR 4 3 6 OR 2 7 8 O 1 O 3-substituted-coumarines LG: OR, Halo Example 2: b r i n g i n g three atoms, see Example 1 as E+ R3 δ+ R2 δO NH2 as Nu:- an α-aminoketone Mircea Darabantu, MASTER DIA. I N T R O D-8a Example 3: acid chlorides as good electrophiles to generate good nucleophiles. The target compound: O 5 R1 4 R1 =/ R2 =/ H O1 3N 2 R2 Retrosynthetic analysis: O 5 R1 4 O1 3N O O 2 hydrolytic disconnection R1 N-3-C-2 and C-2-O-1 N OH O R2 R2 poor ability as Leaving Group weak nucleophile in this environmen O O HN R2 Cl OH R1 O OH NH2 OH NH2 R2 O R1 R1 O better LG than HO C=O more electrophilic C R2 R1 O O HN OH R2 weak electrophile Solution of the problem: good LG R2 O O O OH R1 Cl HN C R2 O R2 O R1 Δ excess N H O C R2 O Nucleophile O _ R2 O -H+ O R1 O N Note: obsolete cyclisation of α-aminoacids as double protected N-, COO- form (oxazoline) R2 Mircea Darabantu, MASTER DIA. I N T R O D-9 2. Substituent modification - the below three main types of substituent modification are of general interest i) nucleophilic displacement: π X π + Nu:- + LG:Nu X LG ii) electrophilic displacement: E H π π + E+ + H+ X X iii) electrophilic displacement via metallation: π X H + R-Mn - RH π X Mn π + E+ - Mn+ Mn: LiI, MgII etc X E 3. Nomenclature: IUPAC general rules - important trivial names are given at the beginning of each chapter: e.g. pyridine instead of azabenzene the type of heteroatom present in the ring is indicated by the below prefixes, in decreasing order of citation (nomenclature as a): O oxa > S thia > Se selena > N aza > P phospha > As arsa > Si sila > B bora etc. Note: the final a is however elided before a vowel e.g. azaole → azole - two or more identical heteroatoms are indicated by dioxa, triaza, etc. If different, the prefixes should be combined according to the above order: e.g. thia-aza-ole → thiazole; e.g. oxa-diaza-ole → oxadiazole; e.g. oxa-thia-ane → oxathiane. numbering of the positions starts at an oxygen, sulphur or nitrogen (in decreasing order of preference) and continues in such way that the heteroatoms are assigned the lowest possible numbers. other things being equal, numbering starts at a substituted rather than at a multiply bonded nitrogen atom. 4 5 N 3 2 5 4 N1 2 N3 N1 CH3 CH3 1-methyl-1,3-diazole 3-methyl-1,3-diazole 1-methylimidazole 3-methylimidazole MAXIMUM UNSATURATION is defined as THE MAXIMUM POSSIBLE NON CUMULATIVE DOUBLE BONDS BY CONSIDERING: O- two valencies S – two valencies N – three valencies Mircea Darabantu, MASTER DIA. I N T R O D-10 The Hantzsch-Widman Nomenclature for Heterocyclic Compounds Rings w i t h Nitrogen Ring Maximum Unsaturation Size 3 3 2 2 Eng. 3 -irine N N1 1 H Rom. 1-azirine 2-azirine -irină 3 2 Eng. 4 -ete 4 N - Eng. -etine 1 azete Rom. -etă Saturated One Double Bond Rom. -etină - 3 2 3 2 4 N1 4 NH 1 1-azetine 2-azetine 3 4 2 NH O1 3 4 2 N O1 Eng. -iridine Rom. -iridină Eng. -etidine Rom. -etidină 3 O1 3 2 N1 H N2 H aziridine oxaziridine 3 2 3 O2 4 NH 4 NH 1 1 azetidine 1,2-oxazetidine 2H-1,2-oxazetine 4H-1,2-oxazetine 5 Eng. -ole Rom. -ol 6 N3 4 5 4 6 8 2 1,3oxazole Eng. -oline Rom. -olină - N3 5 2 N 1 5 N3 4 5 S1 2 4 5 N N4 - - - - - 3 2 O1 5 4 6 7 3 Rom. -ocină 2 N 8 1 azocine 9 Rom. onină 5 6 Eng. -onine 4 7 8 1 N 2 H 1H-azonine 9 2 4,5dihydropyrimidine - 1,4-oxazepine Eng. -ocine N3 1 6 7 2 Δ -thiazoline 6 1,3-diazine pyrimidine Eng. -epine Rom. -epină O1 N1 H 1,3diazole imidazole Rom. -ină 7 5 2 Eng. -ine N3 4 3 Eng. -olidine 3 4 NH 5 Rom. -olidină O1 2 1,3-oxazolidine Nomenclature is made by using the prefix perhydro (total hydrogenated) which precedes the name of the corresponding non saturated structure 4 6 3 NH 5 1 2 N H perhydro-1,3-diazine Mircea Darabantu, MASTER DIA. I N T R O D-11 The Hantzsch-Widman Nomenclature for Heterocyclic Compounds Rings w i t h o u t Nitrogen Ring Maximum Unsaturation Size 3 3 Eng. 2 2 3 -irene O S 4 5 Rom. irenă Eng. -ete Rom. -etă 1 oxirene thiirene 4 3 O1 4 oxete 1,2-oxathiete 4 Eng. -ole 4 3 5 2 O1 oxole furane 3 5 2 S1 thiole thiophene Rom. -olen - 5 3 6 Rom. -ină 2 S1 H Eng. -irane Rom. -iran Eng. -etane Rom. -etan - Eng. -etene Rom. -etenă Eng. -olene 4 Eng. -in - - S2 O1 3 2 Rom. -ol 6 1 Saturated One Double Bond 4 5 2 3 O1 4 2 5 3 3 S1 2 Δ -oxolene Δ -thiolene Eng. -olane Rom. -olan 3 3 2 2 O S 1 1 oxirane thiirane 4 3 4 3 O1 2 S O1 oxetane 1,2-oxathietane 2 4 5 1O 4 3 O3 5 S1 2 1,3-dioxolane thiolane 5 Eng. -ane Rom. -an 6 4 1O O3 2 1,3-dioxane thiin 7 4 5 Eng. -epin 6 Eng. -ocin Rom. ocină 5 7 4 5 3 6 2 7 3 S1 8 1 4H-oxocin Rom. onină Rom. -epan - O Eng. -ocane Rom. -ocan 2 5 4 6 O 3 7 S1 2 thiepane-3-one 4 5 6 3 7 2 S1 8 thiocane 2H-thiocin 5 6 4 7 8 3 9 Eng. -epane 1,3-dioxepin 4 Eng. -onin 2 1 6 8 9 O 1 oxepin 8 7 2 O O3 6 3 7 Rom. epină 4 5 O 1 oxonin 2 5 6 Eng. -onane Rom. -onan 2 4 7 8 3 9 O 1 2 oxonane Mircea Darabantu, MASTER DIA. I N T R O D-12 indicated hydrogen: H in compounds possessing maximum unsaturation, if the double bonds can be arranged in more than one way, their positions are defined by indicating the nitrogen or carbon atoms which are not multiply bonded and consequently carry an “extra” hydrogen atom: 1H, 2H, etc. in partially saturated compounds, the position of the hydrogen atoms can be indicated by the prefixes dihydro if convenient suffix is not available in partially saturated compounds, the position of the double bond can be indicated by the symbol Δa,b which indicates that the double bond is between the atoms numbered “a” and “b” - - Example 1: 4 5 5 2 4 3 4 3 5 2 2 N1 N1 N1 H 1H-pyrrole 3 3H-pyrrole 2H-pyrrole Example 2: 4 4 5 6 S 5 3 5 2 6 2 6 1 thiane (I.U.P.A.C.) 4 4 3 S1 H 1H-thiin S1 3 5 2 6 2H-thiin S1 4 3 5 2 6 4H-thiin 3,4,5,6-tetrahydro-2H-thiin S1 4 3 5 2 6 3,4-dihydro-2H-thiin 2,3-dihydro-4H-thiin with suffix according to IUPAC: in 3 S1 5,6-dihydro-2H-thiin no suffix available according to IUPAC Note: the number of the indicated hydrogen is the lowest possible Example 3: 4 3 5S 6 NH S 2 1 4 5S 6 3 N S 2 2H,6H-1,2,5-dithiazine → max. unsaturation possible is 1 double bond: suffix i n e → order of citation: S, S > N → supplementary hydrogen at N-2 and C-6: 2H,6H 4H,6H-1,2,5-dithiazine → max. unsaturation possible is 1 double bond: suffix i n e → order of citation: S, S > N → supplementary hydrogen at C-4 and C-6: 4H,6H 1 Example 4: 4 5 3 N 6 N S 2 1 4 5 3 N 6 N S 2 1 2 6H-1,2,5-thiadiazine → max. unsaturation possible is 2 double bonds: suffix i n e → order of citation: S > N, N → supplementary hydrogen at C-6: 6H 4H-1,2,5-thiadiazine → max. unsaturation possible is 2 double bonds: suffix i n e → order of citation: S > N, N → supplementary hydrogen at C-4: 4H