MOLECULAR BIOLOGY OF THE CELL 2012 - 2013 - HKU
Transcription
MOLECULAR BIOLOGY OF THE CELL 2012 - 2013 - HKU
MOLECULAR BIOLOGY OF THE CELL 2012 - 2013 (From 14 January to 15 February, 2013) Directors of the course Roberto BRUZZONE HKU - Pasteur Research Centre Hong Kong Philippe CHAVRIER Institut Curie - Research Section Paris Head of Studies Chiara ZURZOLO Institut Pasteur Paris Location Centre d'Enseignement de l'Institut Pasteur Pavillon « Louis Martin » 28, rue du Docteur Roux 75724 Paris Cedex 15 Lectures: Room No 1 Practical Work: Room on the first floor DESCRIPTION OF THE COURSE The Molecular Biology of the Cell course is an intensive laboratory and lecture course of five weeks divided into weekly modules, each focusing on a cutting-edge aspect of cell biology. It is composed of lectures given by internationally renowned scientists, and of two practical sessions organized together with teams from the Curie and the Pasteur Institutes. The main topics of the course alternate between the cell biology of infection, cancer and intracellular trafficking emphasizing new experimental approaches. The availability of the core Imaging Platform at Institut Pasteur will introduce students to advanced techniques for the dynamic visualization of cells in health and disease. The maximum number of participants is 24, which includes a selected number of Master 2 students from the University of Paris 6, Paris 7 and Paris XI and foreign postgraduate students in an interactive classroom setting. The course is intended to be a platform of excellence in which students can meet and closely interact with worldwide top-level scientists to discuss, exchange ideas and establish valuable contacts in the perspective of establishing a network of young cell biologists at an early stage in their careers. Students will be able to understand the importance of basic research and of a broad interdisciplinary approach to improve human health. We also expect to provide orientations and mentoring to help students in their future career. The 2012-2013 course includes two practical sessions of one week each, focused respectively on endocytosis and signaling and on tracking bacterial invasion and identification of virulence factors. At the end of each session students are expected to present and discuss their experiments. At the end of the course there is an exam consisting in the presentation of an imaginary follow-up project based on the critical analysis of a recent scientific article. Students submit a written document (4-5pages) and then discuss their project following a slide presentation. The final evaluation is based on the participation in the course, the presentation of the practical work and the final exam. Practical work 1 MECHANISMS OF ENDOCYTOSIS Endocytosis plays a fundamental role in cellular homeostasis and is required for the cellular uptake of nutrients, controls plasma membrane turnover, the signaling response to hormones and growth factors, antigen presentation or transport of molecules through epithelia. Moreover, many infectious virus, bacteria, or protozoa take advantage of endocytosis to infect cells directly or indirectly via toxins with intracellular activities. Shiga toxin is getting endocytosed in a clathrin independent manner and is reaching the endoplasmatic reticulum via the retrograde route. First, the students will study retrograde trafficking of Shiga toxin and learn how localized perturbation of cellular machinery can influence trafficking of Shiga toxin. Second, the students will use a quantitative assay to study endocytosis of Shiga toxin and transferrin, which are clathrin-independent and clathrin-dependent cargos, respectively. Third, a lipid model membrane (giant unilamellar vesicles, GUVs) will be introduced and the students will learn how to generate GUVs, study phase separation and STxB driven membrane mechanics. Practical work 2 CYTOSKELETAL REGULATION DURING ASTROCYTE POLARIZATION AND MIGRATION Cell migration not only participates in morphogenetic movements during development, but also contributes to tissue renewal, immune responses, wound healing and cancer cell dissemination in adult organisms. Migration is a polarized cellular process, which opposes a protrusive front edge to a retracting trailing edge. From the front to the rear, cytoskeletal rearrangements play a key role in promoting the different processes leading to cell migration. The students will use primary astrocytes in a scratch-induced migration assay to - Identify the changes in morphology and in cytoskeletal organization in migrating astrocytes. - Determine how alteration of cytoskeletal rearrangements modulate astrocyte migration - Assess the role of RhoGTPases in the regulation of the cytoskeletal elements and adhesion complexes during astrocyte migration and conclude on their functions during astrocyte polarization and directed migration ***** GENERAL INTRODUCTION THE ORGANIZATION OF THE CELL 1st WEEK Doctoral School module 1 “Organization of the cell” Monday, 14 January 9:00 - 16:00 Introduction Welcome and administrative matter Institut Pasteur Registration Office Presentation of the scope and overall organization of the course ► Presentation of the practical sessions with organizing teams ► Presentation of the exam and paper assignment ► Roberto BRUZZONE (HKU-Pasteur Research Centre) Philippe CHAVRIER (Institut Curie, France) Chiara ZURZOLO (Institut Pasteur, France) Student presentations 16:00 -18:00 Chromatin assembly from nucleosome to nuclear organization Tuesday, 15 January Geneviève ALMOUZNI (Institut Curie, France) Nucleus and Epigenetics INSTITUT CURIE DAY Location : Amphithéâtre Lacassagne, Institut Curie 26 rue d’Ulm 75005 Paris 9:00 - 11:00 11:00 - 13:00 Chromosomes dynamics and epigenetic changes during X inactivation Nuclear organization during tissue differentiation: dealing with heterochromatin 13:00 - 14:15 Lunch for students and speakers (Chez Marie) 14:30 - 16:30 The epigenome: images from reality Edith HEARD (Institut Curie, France) Susan GASSER (FMI, Switzerland) Valerio ORLANDO (Dulbecco Telethon Institute, Italy) 16:30 - 17:15 Epigenetics during bacterial infections Mélanie HAMON (Institut Pasteur, France) Wednesday, 16 January 9:00 - 10:30 Cell division and cytoskeleton How cells divide Helder MAIATO (IBMC, Lisbon, Portugal) 11:00 - 12:30 14:00 - 15:30 Cytoskeleton and membrane dynamics in the final steps of cell division Actin dynamics and cell migration Arnaud ECHARD (Institut Pasteur, France) Alexis GAUTREAU (CNRS, France) 16:00 - 17:30 Posttranslational modifications of tubulins: more than simple switches Thursday, 17 January 8:45 - 10:00 Carsten JANKE (Institut Curie, France) Frontiers in microscopy Quantitative biologicals imaging Jean-Christophe OLIVO-MARIN (Institut Pasteur, France) 10:15 - 11:15 11:45 - 12:45 14:30 - 15:30 15:45 - 16:45 The targeting of host cell compartments by intracellular bacterial pathogens Jost ENNINGA (Institut Pasteur, France) Dissecting immune responses using intravital two-photon imaging Philippe BOUSSO Intravital microscopy: a power tool to study biological processes in live animals Roberto WEIGERT Dynamic imaging of cellular function (Institut Pasteur, France) (National Institute of Health, USA) David DIGREGORIO (Institut Pasteur, France) 17:15 - 18:15 Following single molecules in live and fixed cells to understand transcription regulation Friday, 18 January Xavier DARZACQ (Ecole Normale Supérieure, France) Institut Pasteur - Institut Curie Day Location: Auditorium Centre François Jacob (building 26) 13:30 - 14:30 14:30 – 15:30 Single-molecule biology and visualization of endocytosis Intravital microscopy as a tool to study membrane traffic and cell biology in live animals 15:30 - 16:00 Coffee Break 16:00 - 16:35 Glycosphingolipid function in the initiation of clathrin-independent endocytosis 16:35 - 17:10 Cortical remodelling and cell division Tom KIRCHHAUSEN (Harvard Medical School, USA) Roberto WEIGERT (National Institute of Health, USA) Ludger JOHANNES (Institut Curie, France) Arnaud ECHARD (Institut Pasteur, France) 17:10 - 18:10 18:15 - 19:00 Endosomal sorting: from mechanisms of membrane deformation and cargo selection, through too functional outcomes for organism development Cocktail ***** Peter CULLEN (University of Bristol, UK) MECHANISM OF INTRACELLULAR TRAFFICKING, ENDOCYTOSIS AND BACTERIAL INFECTION 2nd WEEK Practical work: L. Johannes Doctoral School module 2 “Membrane mechanics of endocytosis” Monday, 21 January 9:00 - 11:00 11:00 -12:00 13:30 - 19:00 Molecular mechanism of clathrin coat formation Tom KIRCHHAUSEN (Harvard Medical School, USA) Endocytosis and retrograde trafficking: mechanisms and applications Ludger JOHANNES Practical work 1: Mechanisms of uptake into cells: Shiga toxin endocytosis and trafficking via the retrograde route Ludger JOHANNES, Guylène K’OUAS and Christian WUNDER (Institut Curie, France) Covalent conjugation of Shiga toxin with a fluorescent probe and chromatographic purification Tuesday, 22 January 9:00 - 11:00 11:00 - 19:00 Multiple functions of myosin motor proteins in membrane trafficking pathways Folma BUSS (University Cambridge, UK) Practical work 1 (continuation): Study the retrograde transport of fluorescent Shiga toxin from the plasma membrane to the endoplasmatic reticulum, including perturbation by ATP-depletion or the Retro-2 inhibitor. Immunofluorescence staining and microscopy. Wednesday, 23 January 9:00 - 11:30 Some physical aspects of membrane trafficking Patricia BASSEREAU (Institut Curie, France) 11:30 - 19:00 Practical work 1 (continuation): Quantitative analysis of endocytosis (Shiga toxin and transferrin) by ELISA Thursday, 24 January 9:00 - 11:30 11:30 - 19:00 The fascinating strategies used by Listeria during infection Pascale COSSART (Institut Pasteur, France) Practical work 1 (continuation): Continuation of ELISA and microscopy of immunofluorescence samples (day2) Friday, 25 January 9:00 - 11:30 11:30 - 19:00 Transendothelial leukocyte migration: integration of adhesive and chemotactic cues under shear forces Ronen ALON (Weizmann Inst. of Science, Israel) Practical work 1(continuation): Generation of giant unilamellar vesicles (GUVs) by electroformation. Study of phase separation and STxB driven membrane mechanics on GUVs. ***** CELL MIGRATION, CYTOSKELETON AND TUMOR INVASION 3rd WEEK Practical work: S. Etienne-Manneville Doctoral School module 3 “Cell migration, cytoskeleton and tumor invasion” Monday, 28 January 8:30 - 9:30 Practical work 2: “Cytoskeletal regulation during astrocyte polarization and migration” Sandrine ETIENNE-MANNEVILLE and Guylène K’OUAS Day 1 morning: cell treatment and scratch assay 9:30 - 11:30 Rho GTPase signaling and cell migration Anne RIDLEY (King’s College London, UK) 12:00 - 13:00 14.00 - 18.00 seminar BCI Roles of Rho GTPases in cancer cell invasion Practical work 2 (continuation): Day 1 afternoon: - si RNA nucleofection - End of the scratch assay. Cell fixation - Beginning of videomicroscopy (Gr 2, 6, 10) Anne RIDLEY Sandrine ETIENNE-MANNEVILLE and Guylène K’OUAS Tuesday, 29 January 9:00 - 11:30 13:00 - 19:00 Astrocyte polarization and migration Sandrine ETIENNE-MANNEVILLE (Institut Pasteur, France) Practical work 2 (continuation) Day 2: - Immunofluorescence - Preparation of primary astrocytes - Beginning of videomicroscopy (Gr 4, 8, 12) Wednesday, 30 January 9:00 - 11:30 13:00 - 19:00 Neuronal migration in the developing brain Oscar MARIN PARRA (Instituto de Neurociencias, UMH, Spain) Practical work 2 (continuation) Day 3 - Microscopy - Result analysis - Beginning of videomicroscopy (Gr 1, 5, 9) Thursday, 31 January 9:00 - 9:30 Practical work 2 (continuation) Day 4 morning Scratch assay on nucleofected cells 9:30 - 12:00 Cell biology of tumor cell invasion Philippe CHAVRIER (Institut Curie, France) 13:30 - 19:00 Practical work 2 (continuation) Day 4 afternoon - Cell lysis, electrophoresis and transfert - End of the scratch assay. Cell fixation. - Beginning of videomicroscopy (Gr 3, 7, 11) Friday, 01 February 9:00 - 11:30 13:00 - 19:00 Using vaccinia virus a tool to dissect cytoskeletal dynamics and signalling networks Practical work 2 (continuation) Day 5 - Western blot - Immunofluorescence ***** Michael WAY (Cancer Research, UK) ANALYTICAL DISSECTION OF THE PRACTICAL WORKSHOPS 4th WEEK Monday, 4 February 9:00 - 12:00 Practical work 2 (end): microscopy, result analysis and preparation of general discussion 12:00 - 13:00 Seminar BCI The diaries of a seasoned traveller: axonal transport and sorting of signalling endosomes 14:00 - 18:00 Giampietro SCHIAVO (Cancer Research, UK) Practical work 2 (end): microscopy, result analysis and preparation of general discussion Tuesday, 5 February 9:00 - 10:30 Motor proteins Giampietro SCHIAVO (Cancer Research, UK) 11:00 - 13:00 14:00 - 16:00 General discussion of Practicals 2 (presentations of students) Giampietro SCHIAVO (Discussion animator) General discussion of Practicals 2 (presentations of students) Wednesday, 6 February 9:00 - 19:00 Practical work 1(end): Microscopy of immunofluorescence samples (day 2). 11:00 - 13:00 Optogenetic dissection of neural circuits function and development Filippo DEL BENE (Institut Curie, France) Thursday, 7 February 9:00 - 10:30 11:00 - 12:30 A career around science: bringing science out of the lab Katja-Stina MAGNUSSON (ISARIC, UK) On scientific writing and the making of a presentation Roberto BRUZZONE (Pasteur Research Center, Hong Kong) Friday, 8 February 9:00 - 11:00 11:30 - 13:00 14:00 - 16:00 Dynamics and mechanics of intracellular signaling: role of caveolae Christophe LAMAZE General discussion of Practicals 1 (presentations of students) Christophe LAMAZE General discussion of Practicals 1 (Institut Curie, France) (Discussion animator) (Institut Curie, France) PROJECT SUBMISSION AND EXAMS 5th WEEK Monday 11 to Tuesday 12 February Project preparation. The written project has to be submitted to the Course Commitee by Tuesday night. Wednesday 13 to Thursday 14 February Preparation of the oral exam Friday, 15 February 9:00 - 18:00 Final examination 18:00 Closing party ***** Detailed description of the examination Oral exam on Friday 15 February, 2013 (mark on a 1-20 scale, coefficient 1): Critical analysis of a scientific article and presentation of an imaginary 3-year research project as follow-up of the results of the article. Presentation: 13 minutes, questions: 7 minutes, total duration: 20 minutes Organization of the oral presentation: - The presentation is open to the public - Slides (Powerpoint or other supported formats) The scientific articles will be given to the students at the end of the first week of the course. As follow-up of the article received each student will write a fictional project in a 4/5 page document that should be submitted to the members of the jury no later than Tuesday 12 February at 20:00. This document should include: - Summary of the article (max 1 page) - Aims and description of the project (max 3 pages including figures if appropriate) - References (max 1 page) Description détaillée de l’examen Examen oral le vendredi 15 février 2013 (note sur 20, coefficient 1) : Présentation critique d’un article et discussion d’un projet fictif sur 3 ans découlant de ces résultats. Présentation : 13 minutes, questions du jury : 7 minutes, durée totale : 20 minutes. Organisation de la présentation orale : - Exposé public de chaque étudiant devant le jury - Diapositives (logiciel Powerpoint ou autre format compatible) Les articles scientifiques seront donnés aux étudiants à la fin de la première semaine de cours. Le projet fictif est présenté dans un document de 4/5 pages à remettre au jury au plus tard le mardi 12 février à 20h00, comprenant : - Résumé de l’article (max 1 page) - Objectifs et description du projet (max 3 pages, figures incluses) - Bibliographie (max 1 page) ***** Centre d’Enseignement MOLECULAR BIOLOGY OF THE CELL COURSE 2012 - 2013 ADDRESS DETAILS ***** Name First name email Institution Address City Country Telephone ORGANIZERS OF THE COURSE Mr BRUZZONE Roberto [email protected] HKU-Pasteur Research Centre 1/F Dexter HC Man Building, 8 Sassoon Road Pokfulam, Hong Kong Hong Kong 852-28168403 26, rue d'Ulm 75248 Paris Cedex 05 France 33-(0)156246359 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)145688277 Mr CHAVRIER Philippe [email protected] Membrane & Actin Dynamics Lab, CNRS/UMR144, Institut Curie Ms ZURZOLO Chiara [email protected] Membrane Trafficking and Pathogenesis Unit, Institut Pasteur LECTURERS Ms ALMOUZNI Geneviève [email protected] UMR 218 CNRS Institut Curie 26, rue d'Ulm 75248 Paris Cedex 05 France 33-(0)156246701 Mr ALON Ronen [email protected] Dept. of Immunology, Weizmann Institute of Science Wolfson Bldg., Room 330 Rehovot 76100 Israel 972-8 934 2482 Ms BASSEREAU Patricia [email protected] Physico-chimie Curie, Institut Curie Research Center 26, rue d'Ulm 75248 Paris Cedex 05 France Ms BOUSSO Philippe [email protected] 75724 Paris Cedex 15 France 33-(0)1 45 68 85 51 Ms BUSS Folma [email protected] Cambridge CB2 0XY UK 44-1223 763348 Ms COSSART Pascale [email protected] Unité des Interactions Bactéries-Cellules, Institut Pasteur 75724 Paris Cedex 15 France 33-(0)1 45 68 88 41 [email protected] Henry Wellcome Integrated Signaling Laboratories, Department of Chemistry, School of Medical Sciences, University of Bristol Bristol BS8 1TD UK 44-117 3312193 Mr CULLEN Peter Unité des Dynamiques des 25/28 rue du Dr Réponses Immunes, Roux Institut Pasteur University of Cambridge, Cambridge Institute for Hills Road Medical Research, Wellcome Trust/MRC Building, 25/28 rue du Dr Roux Name Mr DARZACQ First name Xavier email Institution Address City Country [email protected] Functional Imaging of Transcription, Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR 8197 46, rue d'Ulm 75230 Paris Cedex 05 France 26, rue d'Ulm 75248 Paris Cedex 05 France Telephone Mr DEL BENE Filippo [email protected] Génétique & Biologie du Développement, CNRS UMR3215 / INSERM U934, Institut Curie Mr DIGREGORIO David [email protected] Unit of Dynamic Neuronal Imaging, Institut Pasteur 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)1 45 68 80 54 Mr ECHARD Arnaud [email protected] Membrane Traffic & Cell Division Lab Institut Pasteur 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)1 44 38 94 09 Mr ENNINGA Jost [email protected] Groupe Dynamique 25/28 rue du Dr Interactions Hôte-Pathogène, Roux Institut Pasteur 75724 Paris Cedex 15 France 33-(0)1 44 38 94 13 Ms ETIENNEMANNEVILLE Sandrine [email protected] 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)1 40 61 39 05 Ms GASSER Susan [email protected] Friedrich Miescher Institute for Maulbeerstrasse Biomedical Research 66 4058 Basel Switzerland 41-61 697 5025 Mr GAUTREAU Alexis [email protected] Laboratoire d'Enzymologie et Biochimie Structurales, UPR3082 CNRS Bât. 34, Avenue de la Terrasse 91198 Gif-surYvette Cedex France 33-(0)1 69 82 35 08 Ms HAMON Mélanie [email protected] Unité des Interactions Bactéries-Cellules, Institut Pasteur 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)145688995 Ms HEARD Edith [email protected] INSERM U934 / CNRM UMR3215, Institut Curie 26, rue d'Ulm 75248 Paris Cedex 05 France 33-(0)156246829 Unité de Polarité Cellulaire, Migration & Cancer, Institut Pasteur Name Mr Mr JANKE JOHANNES First name Carsten Ludger email Institution Address City Country Telephone [email protected] Institut Curie, Dept. Signalling, Neurobiology & Cancer, CNRS UMR3306 - INSERM U1005 Bat 110, Centre Universitaire 91405 Orsay Cedex France 33-(0)1 69 86 31 27 [email protected] Laboratoire Trafic, Signalisation & Criblage Intracellulaire, UMR 144, Institut Curie 26, rue d'Ulm 75248 Paris Cedex 05 France 33-(0)1 56 24 63 51 Boston, MA 02115 USA 1-617 713 8682 33-(0)1 56 24 69 66 Mr KIRCHHAUSEN Tom [email protected] Immune Disease Institute, Harvard Medical School W. Alpert Building, Room 133, 200 Longwood Ave. Mr LAMAZE Christophe [email protected] UMR 144 Curie / CNRS, Institut Curie 26, rue d'Ulm 75248 Paris Cedex 05 France [email protected] ISARIC Project Manager, University of Oxford, Nuffield Department of Medicine Churchill Hospital, Old Road Oxford OX3 7LJ UK Rue do Campo Alegre 823 4150-180 Porto Portugal 351-22 6074 900 Ms MAGNUSSON Kajsa-Stina Mr MAIATO Helder [email protected] Chromosome Instability & Dynamics Lab., Instituto de Biologia Molecular e Celular, Universidade do Porto Mr MARIN PARRA Oscar [email protected] Instituto de Neurociencias, UMH-CSIC Avda. Ramon y cajal s/n 03550 Sant Joan d'Alacant Spain 34-965 91 9415 Mr OLIVO-MARIN Jean-Christophe [email protected] Unité d'Analyse d'Images Quantitative, Institut Pasteur 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)1 45 68 85 06 Mr ORLANDO Valerio [email protected] Dulbecco Telethon Institute, IRCCS Santa Lucia Via del Fosso di Fiorano 64 00143 Roma Italy 39-06 501 703260 Name First name email Institution Address City Country Telephone Guy's Campus London SE1 1UL UK 44-(0)20 7848 6209 Ms RIDLEY Anne [email protected] King's College London, Randall Division of Cell and Molecular Biophysics, New Hunt's House Mr SCHIAVO Giampietro [email protected] Cancer Research UK, London Research Institute 44 Lincoln's Inn Fields London WC2A 3LY UK 44-207 269 3300 Mr WAY Michael [email protected] Cell Motility Laboratory, Cancer Research UK, London Research Institute 44 Lincoln's Inn Fields London WC2A 3LY UK 44-207 269 3733 [email protected] Intracellular Membrane Trafficking Unit, Oral and Pharyngeal Cancer Branch, National Institute of Dental and Craniofacial Research, NIH 30 Convent Dr. Room 303A Bethesda, MD 20892-4340 USA Mr WEIGERT Roberto PRACTICAL WORK Ms Mr K'OUAS WUNDER Guylène Christian [email protected] Centre d'Enseignement, Institut Pasteur 25/28 rue du Dr Roux 75724 Paris Cedex 15 France [email protected] Laboratoire Trafic, Signalisation & Criblage Intracellulaire, UMR 144, Institut Curie 26, rue d'Ulm 75248 Paris Cedex 05 France 25/28 rue du Dr Roux 75724 Paris Cedex 15 France 33-(0)1 40 61 30 02 SECRETARY Ms COURMARCEL Fabienne [email protected] Centre d'Enseignement, Institut Pasteur 33-(0)1 40 61 38 79